Singularity-free constraint on molecular dynamics beyond Lagrange multiplier

被引:1
|
作者
Hirano, Tomonori [1 ]
Wang, Lin [1 ,2 ]
Morita, Akihiro [1 ,2 ]
机构
[1] Tohoku Univ, Grad Sch Sci, Dept Chem, Sendai, Miyagi, Japan
[2] Kyoto Univ, ESICB, Kyoto, Japan
基金
日本学术振兴会;
关键词
Constraint dynamics; linear molecule; Gauss' principle of least constraint; SHAKE; SIMULATIONS; ALGORITHM; EQUATIONS; ALKANES; RATTLE;
D O I
10.1080/08927022.2018.1467012
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We propose a constraint algorithm of molecular dynamics (MD) in the case that the Lagrange multipliers would bring about singularity, such as the constraint of linear molecules. Present extension to allow for the singular constraints is readily implemented in MD programs, and demonstrates stable and efficient performance to treat various singular constraints during the MD simulation.
引用
收藏
页码:965 / 972
页数:8
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