Predicting Adsorption Affinities of Small Molecules on Carbon Nanotubes Using Molecular Dynamics Simulation

被引:83
|
作者
Comer, Jeffrey [1 ,2 ,3 ]
Chen, Ran [1 ,2 ]
Poblete, Horacio [1 ,2 ,3 ]
Vergara-Jaque, Ariela [1 ,2 ,3 ]
Riviere, Jim E. [1 ,3 ]
机构
[1] Kansas State Univ, Inst Computat Comparat Med, Manhattan, KS 66506 USA
[2] Kansas State Univ, Nanotechnol Innovat Ctr Kansas State, Manhattan, KS 66506 USA
[3] Kansas State Univ, Dept Anat & Physiol, Manhattan, KS 66506 USA
基金
美国国家科学基金会;
关键词
nanoparticles; free-energy calculations; surface physicochemistry; virtual screening; benzene derivatives; graphene; surface functionalization; aromatic; FREE-ENERGY CALCULATIONS; GENERAL FORCE-FIELD; BINDING FREE-ENERGY; LIQUID-CHROMATOGRAPHY; DRUG-DELIVERY; PARTICLE-SIZE; IN-VITRO; NANOPARTICLES; SURFACE; GOLD;
D O I
10.1021/acsnano.5b03592
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Computational techniques have the potential to accelerate the design and optimization of nanomaterials for applications such as drug delivery and contaminant removal; however, the success of such techniques requires reliable models of nanomaterial surfaces as well as accurate descriptions of their interactions with relevant solutes. In the present work, we evaluate the ability of selected models of naked and hydroxylated carbon nanotubes to predict adsorption equilibrium constants for about 30 small aromatic compounds with a variety of functional groups. The equilibrium constants determined using molecular dynamics coupled with free-energy calculation techniques are directly compared to those derived from experimental measurements. The calculations are highly predictive of the relative adsorption affinities of the compounds, with excellent correlation (r >= 0.9) between calculated and measured values of the logarithm of the adsorption equilibrium constant. Moreover, the agreement in absolute terms is also reasonable, with average errors of less than one decade. We also explore possible effects of surface loading, although we demonstrate that they are negligible for the experimental conditions considered. Given the degree of reliability demonstrated, we move on to employing the in silico techniques in the design of nanomaterials, using the optimization of adsorption affinity for the herbacide atrazine as an example. Our simulations suggest that, compared to other modifications of graphenic carbon, polyvinylpyrrolidone conjugation gives the highest affinity for atrazine substantially greater than that of graphenic carbon alone-and may be useful as a nanomaterial for delivery or sequestration of atrazine.
引用
收藏
页码:11761 / 11774
页数:14
相关论文
共 50 条
  • [1] Adsorption of Hydrogen Molecules on Carbon Nanotubes Using Quantum Chemistry and Molecular Dynamics
    Faginas-Lago, N.
    Yeni, D.
    Huarte, F.
    Wang, Y.
    Alcami, M.
    Martin, F.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2016, 120 (32): : 6451 - 6458
  • [2] Transport characteristics of water molecules in carbon nanotubes investigated by using molecular dynamics simulation
    Vijayaraghavan, V.
    Wong, C. H.
    [J]. COMPUTATIONAL MATERIALS SCIENCE, 2014, 89 : 36 - 44
  • [3] Molecular simulation of adsorption in carbon nanotubes
    Düren, T
    Keil, FJ
    [J]. CHEMIE INGENIEUR TECHNIK, 2000, 72 (08) : 833 - 837
  • [4] Molecular Dynamics Simulation of Carbon Structures Inside Small Diameter Carbon Nanotubes
    Laszlo, Istvan
    Gyimesi, Balint
    Koltai, Janos
    Kurti, Jeno
    [J]. PHYSICA STATUS SOLIDI B-BASIC SOLID STATE PHYSICS, 2017, 254 (11):
  • [5] Molecular dynamics simulation of carbon nanotubes
    [J]. Sharma, Sumit (sumit_sharma1772@yahoo.com), 1600, Begell House Inc. (04):
  • [6] Molecular dynamics simulation of the adsorption of alkali metal cations on carbon nanotubes surfaces
    Lado Tourino, I
    Barrrios-Bermudez, N.
    Cerpa-Naranjo, A.
    Rojas-Cervantes, M. L.
    [J]. COMPUTATIONAL CONDENSED MATTER, 2019, 18
  • [7] Molecular dynamics simulation study of the structure and diffusion of water molecules confined in carbon nanotubes
    Yang, Hai-Feng
    Li, Hai-Long
    Xiao, Ya-Mei
    Yang, Xiao-Feng
    [J]. Rengong Jingti Xuebao/Journal of Synthetic Crystals, 2014, 43 (12): : 3295 - 3300
  • [8] Molecular Dynamics of Adsorption of Argon on Graphene, Carbon Nanotubes and Carbon Nanotubes Bundles
    Pushparajalingam, Jegan S.
    Kalweit, Marco
    Labois, Mathieu
    Drikakis, Dimitris
    [J]. JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2009, 6 (10) : 2156 - 2163
  • [9] Disruption of small double stranded DNA molecules on carbon nanotubes: A molecular dynamics study
    Alegret, Nuria
    Santos, Eva
    Rodriguez-Fortea, Antonio
    Xavier Rius, F.
    Poblet, Josep M.
    [J]. CHEMICAL PHYSICS LETTERS, 2012, 525-26 : 120 - 124
  • [10] Predicting the elastic properties of double-walled carbon nanotubes by molecular dynamics simulation
    Zhang, Chen-Li
    Shen, Hui-Shen
    [J]. JOURNAL OF PHYSICS D-APPLIED PHYSICS, 2008, 41 (05)