Radiotelemetry, mark-recapture trapping, and microsatellite analysis of genetic variation among three subpopulations were used to investigate the natal dispersal patterns, genetic structure, and social organization within a high-density island population of an insectivorous marsupial, the swamp antechinus (Antechinus minimus (E. Geoffroy Saint-Hilaire, 1803)). Both demographic and genetic data indicated a high degree of philopatry for both sexes. Associated with high philopatry is low gene flow, often leading to high population genetic structuring. However, there was only weak evidence to support this; allele frequencies and genotype composition of one population tended to be different from the other two. Interestingly, timing of breeding of this subpopulation was delayed compared with the other two subpopulations. The philopatry of both sexes and the apparent lack of kin avoidance behaviour could lead to inbreeding. However, no apparent inbreeding effects were observed and offspring survival was high compared with mainland populations. The fact that male home-range size increased during the breeding season, overlapping with several females, and single females were found nesting with different males at the time of mating (and vice versa) indicates a promiscuous mating system. Potentially, this may reduce inbreeding to some extent. Alternatively, inbreeding may not be purposefully avoided, potentially leading to purging of detrimental alleles, thereby reducing their damaging effects on inbreeding.