Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

被引：2
|
作者：
Tung Phan [1 ]
Hatazawa, Riona [2 ]
Komoto, Satoshi [2 ]
Nishimura, Shuichi [3 ]
Khamrin, Pattara [4 ]
Pham, Ngan Thi Kim [5 ]
Okitsu, Shoko [5 ]
Kobayashi, Takashi [6 ]
Maneekarn, Niwat [4 ]
Hayakawa, Satoshi [5 ]
Ushijima, Hiroshi [5 ]
机构：
[1] Univ Pittsburgh, Dept Pathol, Pittsburgh, PA USA
[2] Fujita Hlth Univ, Dept Virol & Parasitol, Sch Med, Toyoake, Aichi, Japan
[3] Nishimura Clin, Kyoto, Japan
[4] Chiang Mai Univ, Fac Med, Dept Microbiol, Chiang Mai, Thailand
[5] Nihon Univ, Div Microbiol, Sch Med, Itabashi Ku, Tokyo, Japan
[6] Osaka Univ, Res Inst Microbial Dis, Dept Virol, Osaka, Japan
来源：
ARCHIVES OF VIROLOGY | 2022年 / 167卷 / 07期
关键词：
STRAINS; CHILDREN; CLASSIFICATION; INDIA; G9;
D O I：
10.1007/s00705-022-05462-2
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.
引用
收藏
页码：1603 / 1606
页数：4
相关论文
共 39 条
  • [1] Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan
    Tung Phan
    Riona Hatazawa
    Satoshi Komoto
    Shuichi Nishimura
    Pattara Khamrin
    Ngan Thi Kim Pham
    Shoko Okitsu
    Takashi Kobayashi
    Niwat Maneekarn
    Satoshi Hayakawa
    Hiroshi Ushijima
    [J]. Archives of Virology, 2022, 167 : 1603 - 1606
  • [2] Whole genome sequencing and genomic characterization of a DS-1-like G2P[4] group A rotavirus in Japan
    Phan, Tung
    Hikita, Toshiyuki
    Okitsu, Shoko
    Akari, Yuki
    Komoto, Satoshi
    Hayakawa, Satoshi
    Ushijima, Hiroshi
    [J]. VIRUS GENES, 2023, 59 (05) : 688 - 692
  • [3] Whole genome sequencing and genomic characterization of a DS-1-like G2P[4] group A rotavirus in Japan
    Tung Phan
    Toshiyuki Hikita
    Shoko Okitsu
    Yuki Akari
    Satoshi Komoto
    Satoshi Hayakawa
    Hiroshi Ushijima
    [J]. Virus Genes, 2023, 59 : 688 - 692
  • [4] Full genome characterization of novel DS-1-like G9P[8] rotavirus strains that have emerged in Thailand
    Fukuda, Saori
    Tacharoenmuang, Ratana
    Guntapong, Ratigorn
    Upachai, Sompong
    Singchai, Phakapun
    Ide, Tomihiko
    Hatazawa, Riona
    Sutthiwarakom, Karun
    Kongjorn, Santip
    Onvimala, Napa
    Ruchusatsawast, Kriangsak
    Rungnopakun, Pimpa
    Mekmallika, Jutarat
    Kawamura, Yoshiki
    Motomura, Kazushi
    Tatsumi, Masashi
    Takeda, Naokazu
    Murata, Takayuki
    Yoshikawa, Tetsushi
    Uppapong, Ballang
    Taniguchi, Koki
    Komoto, Satoshi
    [J]. PLOS ONE, 2020, 15 (04):
  • [5] Unusual mono-reassortant of a Wa-like G1P[8] species A rotavirus containing a DS-1-like (genotype 2) NSP4 gene
    Tung Phan
    Tomihiko Ide
    Satoshi Komoto
    Pattara Khamrin
    Shoko Okitsu
    Koki Taniguchi
    Hideaki Kikuta
    Niwat Maneekarn
    Satoshi Hayakawa
    Hiroshi Ushijima
    [J]. Virus Genes, 2020, 56 : 638 - 641
  • [6] Whole-Genome Characterization of Rotavirus G9P[6] and G9P[4] Strains That Emerged after Rotavirus Vaccine Introduction in Mozambique
    Munlela, Benilde
    Joao, Eva D.
    Strydom, Amy
    Bauhofer, Adilson Fernando Loforte
    Chissaque, Assucenio
    Chilaule, Jorfelia J.
    Mauricio, Isabel L.
    Donato, Celeste M.
    O'Neill, Hester G.
    de Deus, Nilsa
    [J]. VIRUSES-BASEL, 2024, 16 (07):
  • [7] Unusual mono-reassortant of a Wa-like G1P[8] species A rotavirus containing a DS-1-like (genotype 2) NSP4 gene
    Phan, Tung
    Ide, Tomihiko
    Komoto, Satoshi
    Khamrin, Pattara
    Okitsu, Shoko
    Taniguchi, Koki
    Kikuta, Hideaki
    Maneekarn, Niwat
    Hayakawa, Satoshi
    Ushijima, Hiroshi
    [J]. VIRUS GENES, 2020, 56 (05) : 638 - 641
  • [8] Full Genome Sequence of a Reassortant Human G9P[4] Rotavirus Strain
    Lewis, Jamie
    Roy, Sunando
    Esona, Mathew D.
    Mijatovic-Rustempasic, Slavica
    Hardy, Christine
    Wang, Yuhuan
    Cortese, Margaret
    Bowen, Michael D.
    [J]. GENOME ANNOUNCEMENTS, 2014, 2 (06)
  • [9] Detection of three independently-generated DS-1-like G9P [8] reassortant rotavirus A strains during the G9P [8] dominance in Vietnam, 2016-2018
    Thi Nguyen Hoa-Tran
    Nakagomi, Toyoko
    Hung Manh Vu
    Trang Thu Thi Nguyen
    Takemura, Taichiro
    Hasebe, Futoshi
    Anh Thi Hai Dao
    Pham Hong Quynh Anh
    Anh The Nguyen
    Anh Duc Dang
    Nakagomi, Osamu
    [J]. INFECTION GENETICS AND EVOLUTION, 2020, 80
  • [10] Molecular Identification of a G2 Rotavirus That Provided a G1P[4] Mono-Reassortant With a DS-1-Like Genotype Constellation
    Sasaki, Eriko
    Nakagomi, Toyoko
    Doan, Yen Hai
    Gauchan, Punita
    Kaneko, Miho
    Nakagomi, Osamu
    [J]. JOURNAL OF MEDICAL VIROLOGY, 2015, 87 (04) : 694 - 701
1234