Approximate Likelihood Estimation of Divergence Time Range Using a Coalescent-based Model

被引:2
|
作者
RoyChoudhury, Arindam [1 ]
机构
[1] Columbia Univ, Dept Biostat, New York, NY 10027 USA
来源
关键词
divergence time; range; confidence interval; maximum likelihood; coalescent; PRUNING ALGORITHM;
D O I
10.4137/EBO.S13080
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
We present an estimation of divergence time-range based on a coalescent model. This model sum the probability of coalescent trees, taking into account the effect of incomplete lineage sorting. Maximum likelihood estimate based on this model has been computed previously; however, a formula for divergence time-range estimate or confidence interval has never been presented for this model as the expression of the likelihood makes this estimation difficult to compute. Our formula for the divergence time-range estimate can be readily coded into a program. We did not use a simulation or resampling-based approach and therefore our method is fast and less computationally intensive. We demonstrate that our method is much faster and as accurate a simulation-based approach.
引用
收藏
页码:499 / 509
页数:11
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