Multimodal analysis of south-eastern Black Sea sediment bacterial population diversity

被引:1
|
作者
Kalkan, Samet [1 ]
机构
[1] Recep Tayyip Erdogan Univ, Fac Fisheries, Ataturk St Fener Dist, TR-53100 Merkez, Rize, Turkey
关键词
Bacterial diversity; Heterotrophic bacteria; Marine sediment; 16S rRNA sequencing; MALDI-TOF-MS; DESORPTION IONIZATION-TIME; FLIGHT MASS-SPECTROMETRY; MALDI-TOF MS; CULTURABLE HETEROTROPHIC BACTERIA; BREVIBACTERIUM-FRIGORITOLERANS; VITEK MS; PHYLOGENETIC DIVERSITY; ROUTINE IDENTIFICATION; BRUKER BIOTYPER; IONIAN SEA;
D O I
10.1016/j.marpolbul.2022.114063
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
This study focused on marine sediments from the Black Sea, mainly due to bacterial diversity-induced public health / biotechnology application value. Sediment samples were gathered from 14 locations at differing depths across Turkish shores on a seasonal basis over 10 months, with bacterial identifications performed through using multimodal analytical platforms. Overall, 26 differing, predominantly Gram-positive (57.5 %) bacterial species were identified for this region, including Bacillaceae (50.0 %) and Pseudomonadaceae (15.0 %). The most dominant classes were identified as Bacilli (52.5 %) and Gammaproteobacteria (40.0 %). Ten isolates (25 %) to the species level and thirty-six isolates (90 %) to the genus level were identified using VITEK (R) MS and Bruker Microflex (R) LT/SH, in comparison to 16S rRNA sequencing results. Identified species - particularly, novel reported species - can contribute to the knowledge of microbial life dwelling upon sediments of the south-eastern regions of the Black Sea.
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页数:14
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