An efficient combination of BEST and NUS methods in multidimensional NMR spectroscopy for high throughput analysis of proteins

被引:9
|
作者
Kakita, Veera Mohana Rao [1 ]
Bopardikar, Mandar [2 ]
Shukla, Vaibhav Kumar [1 ]
Rachineni, Kavitha [1 ]
Ranjan, Priyatosh [3 ]
Singh, Jai Shankar [3 ]
Hosur, Ramakrishna, V [1 ,2 ]
机构
[1] Univ Mumbai, UM DAE Ctr Excellence Basic Sci, Kalina Campus, Bombay 400098, Maharashtra, India
[2] TIFR, Dept Chem Sci, 1 Homi Bhabha Roar, Bombay 400005, Maharashtra, India
[3] IIT B, Dept Biosci & Bioengn, Bombay 400076, Maharashtra, India
关键词
ALPHA-SYNUCLEIN; SIMULTANEOUS ACQUISITION; SEQUENTIAL CORRELATIONS; PARALLEL ACQUISITION; STRUCTURE GENERATION; PARKINSONS-DISEASE; CHEMICAL-SHIFTS; SPECTRA; RESOLUTION; MUTATION;
D O I
10.1039/c8ra00527c
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Application of Non Uniform Sampling (NUS) along with Band-selective Excitation Short-Transient (BEST) NMR experiments has been demonstrated for obtaining the important residue-specific atomic level backbone chemical shift values in short durations of time. This application has been demonstrated with both well-folded (ubiquitin) and unfolded (alpha-synuclein) proteins alike. With this strategy, the experiments required for determining backbone chemical shifts can be performed very rapidly, i.e., in similar to 2 hours of spectrometer time, and this data can be used to calculate the backbone folds of proteins using well established algorithms. This will be of great value for structural proteomic investigations on one hand, where the speed of structure determination is a limiting factor and for application in the study of slow kinetic processes involving proteins, such as fibrillization, on the other hand.
引用
收藏
页码:17616 / 17621
页数:6
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