Toward a Molecular Dynamics Force Field for Simulations of 40% Trifluoroethanol-Water

被引:20
|
作者
Gerig, J. T. [1 ]
机构
[1] Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2014年 / 118卷 / 06期
基金
美国国家科学基金会;
关键词
AQUEOUS-SOLUTION; SPIN RELAXATION; 2,2,2-TRIFLUOROETHANOL; MIXTURES; PEPTIDE; ETHANOL; MODEL; NMR; PROTEINS; FLUOROALCOHOLS;
D O I
10.1021/jp408879g
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Various computational models of trifluoroethanol (TFE) and water have been explored with the goal of finding a system for molecular dynamics (MD) simulations that reliably predict properties of 40% TFE water (v/v) and can be used in studies of peptide solvent nuclear cross-relaxation. Models derived by modification of TFE parameters developed by Fioroni et al. (J. Phys. Chem. B 2000, 104, 12347), in combination with either TIP4P-Ew or TIPSP-E water, were most successful. Simulations of 40% TFE TIP4P-Ew water evidenced separation of the system into large TFE-rich and water-rich domains. With TIPSP-E water, simulations showed aggregation of each solvent component into small clusters. Nuclear spin dipolar interactions between solvent fluorines and the methyl hydrogens of acetate ion dissolved in 40% TFE water were calculated. The cross-relaxation parameter sigma(HF) reckoned for the TFE TIPSP-E system agreed with experiment while the value calculated using the TFE-TIP4P-Ew system was too low. While the TFE-TIP5P-E model of 40% TFE water leads to good predictions of the system density, translational diffusion coefficients, and a solvent solute cross-relaxation parameter, this model performs poorly in predicting the enthalpy of mixing. Preliminary studies of 20% TFE water and 50% TFE-water suggest that the model will perform with the same characteristics for mixtures that have compositions near 4096 TFE-water.
引用
收藏
页码:1471 / 1480
页数:10
相关论文
共 50 条
  • [1] Further Efforts Toward a Molecular Dynamics Force Field for Simulations of Peptides in 40% Trifluoroethanol-Water
    Gerig, John T.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (16): : 5163 - 5175
  • [2] Examination of Trifluoroethanol Interactions with Trp-Cage in Trifluoroethanol-Water at 298 K through Molecular Dynamics Simulations and Intermolecular Nuclear Overhauser Effects
    Gerig, J. T.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2019, 123 (15): : 3248 - 3258
  • [3] Hydrogen bonding in ethanol-water and trifluoroethanol-water mixtures studied by NMR and molecular dynamics simulation
    Matsugami, Masaru
    Yamamoto, Ryohei
    Kumai, Takashi
    Tanaka, Miho
    Umecky, Tatsuya
    Takamuku, Toshiyuki
    JOURNAL OF MOLECULAR LIQUIDS, 2016, 217 : 3 - 11
  • [4] Molecular dynamics simulations of a DMSO/water mixture using the AMBER force field
    Slawomir S. Stachura
    Chris J. Malajczuk
    Ricardo L. Mancera
    Journal of Molecular Modeling, 2018, 24
  • [5] Molecular dynamics simulations of a DMSO/water mixture using the AMBER force field
    Stachura, Slawomir S.
    Malajczuk, Chris J.
    Mancera, Ricardo L.
    JOURNAL OF MOLECULAR MODELING, 2018, 24 (07)
  • [7] On the use of a spectroscopic force field in molecular dynamics simulations
    Journal de Chimie Physique et de Physico-Chimie Biologique, 94 (7-8):
  • [8] A polarizable reactive force field for water to enable molecular dynamics simulations of proton transport
    Asthana, Abhishek
    Wheeler, Dean R.
    JOURNAL OF CHEMICAL PHYSICS, 2013, 138 (17):
  • [9] Branched polyethyleneimine: CHARMM force field and molecular dynamics simulations
    Terteci-Popescu, Andrada-Elena
    Beu, Titus Adrian
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2022, 43 (31) : 2072 - 2083
  • [10] Molecular Dynamics Simulations of Sodium Dodecyl Sulfate Micelles in Water-The Effect of the Force Field
    Tang, Xueming
    Koenig, Peter H.
    Larson, Ronald G.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (14): : 3864 - 3880