Colored Petri Nets for Multiscale Systems Biology - Current Modeling and Analysis Capabilities in Snoopy

被引：0

作者：

Liu, Fei ^{[1
]}

Heiner, Monika ^{[2
]}

Yang, Ming ^{[1
]}

机构：

[1] Harbin Inst Technol, Control & Simulat Ctr, Harbin 150001, Peoples R China

[2] Brandenburg Tech Univ Cottbus, Dept Comp Sci, D-03044 Cottbus, Germany

来源：

2013 7TH INTERNATIONAL CONFERENCE ON SYSTEMS BIOLOGY (ISB) | 2013年

基金：

中国国家自然科学基金;

关键词：

D O I：

暂无

中图分类号：

TP39 [计算机的应用];

学科分类号：

081203 ; 0835 ;

摘要：

Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.

引用

页码：24 / 30

页数：7

共 50 条

[1] Compositional colored Petri net approach to multiscale modeling for systems biology
Liu, Fei
Yang, Ming
[J]. INTERNATIONAL JOURNAL OF MODELING SIMULATION AND SCIENTIFIC COMPUTING, 2014, 5 (04)
[2] AN INTRODUCTION TO SYSTEMS MODELING AND SIMULATION WITH COLORED PETRI NETS
Gehlot, Vijay
Nigro, Carmen
[J]. PROCEEDINGS OF THE 2010 WINTER SIMULATION CONFERENCE, 2010, : 104 - 118
[3] Modeling interactive systems with hierarchical colored Petri nets
Elkoutbi, M
Keller, RK
[J]. PROCEEDINGS OF THE HIGH-PERFORMANCE COMPUTING (HPC'98), 1998, : 432 - 437
[4] Colored Petri nets for modeling of networked control systems
Farah, Khamsa
Chabir, Karim
Abdelkrim, Mohamed Naceur
[J]. 2019 19TH INTERNATIONAL CONFERENCE ON SCIENCES AND TECHNIQUES OF AUTOMATIC CONTROL AND COMPUTER ENGINEERING (STA), 2019, : 226 - 230
[5] Modeling of railway nets with colored Petri nets
Paliulis, E
Pranevicius, H
[J]. TRANSPORT MEANS 2004: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE, 2004, : 39 - 43
[6] Modeling and Analysis of Flexible Manufacture Systems through Hierarchical and Colored Petri Nets
Aguiar, Marcelo
Barreto, Raimundo
Caldas, Ruiter
Chaves Filho, Joao Edgar
[J]. 2008 IEEE INTERNATIONAL CONFERENCE ON INDUSTRIAL TECHNOLOGY, VOLS 1-5, 2008, : 1113 - 1118
[7] Modeling and Analysis of Stage Machinery Control Systems by Timed Colored Petri Nets
Zhang, Hehua
Gu, Ming
Song, Xiaoyu
[J]. 2008 INTERNATIONAL SYMPOSIUM ON INDUSTRIAL EMBEDDED SYSTEMS, 2008, : 103 - +
[8] Modeling membrane systems using colored stochastic Petri nets
Fei Liu
Monika Heiner
[J]. Natural Computing, 2013, 12 : 617 - 629
[9] Modeling of information systems security features with colored Petri nets
Mikolajczak, B
Joshi, S
[J]. 2004 IEEE INTERNATIONAL CONFERENCE ON SYSTEMS, MAN & CYBERNETICS, VOLS 1-7, 2004, : 4879 - 4884
[10] Integrated modeling of electronics assembly systems by colored petri nets
Tam, HW
Law, HW
Au, AYM
[J]. JOURNAL OF ELECTRONICS MANUFACTURING, 1997, 7 (03): : 161 - 169

← 1 2 3 4 5 →