In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology?

被引:36
|
作者
Gallat, Francois-Xavier [1 ]
Matsugaki, Naohiro [1 ]
Coussens, Nathan P. [2 ]
Yagi, Koichiro J. [3 ]
Boudes, Marion [4 ]
Higashi, Tetsuya [5 ]
Tsuji, Daisuke [5 ]
Tatano, Yutaka [6 ]
Suzuki, Mamoru [7 ]
Mizohata, Eiichi [8 ]
Tono, Kensuke [9 ]
Joti, Yasumasa [9 ]
Kameshima, Takashi [9 ]
Park, Jaehyun [10 ]
Song, Changyong [10 ]
Hatsui, Takaki [10 ]
Yabashi, Makina [10 ]
Nango, Eriko [10 ]
Itoh, Kohji [5 ]
Coulibaly, Fasseli [4 ]
Tobe, Stephen [3 ]
Ramaswamy, S. [11 ]
Stay, Barbara [12 ]
Iwata, So [10 ]
Chavas, Leonard M. G. [13 ]
机构
[1] High Energy Accelerator Res Org, Photon Factory, Tsukuba, Ibaraki 3050801, Japan
[2] NIH, Natl Ctr Adv Translat Sci, Rockville, MD 20850 USA
[3] Univ Toronto, Dept Cell & Syst Biol, Toronto, ON M5S 3G5, Canada
[4] Monash Univ, Dept Biochem & Mol Biol, Clayton, Vic 3800, Australia
[5] Univ Tokushima, Dept Med Biotechnol, Tokushima 7708505, Japan
[6] Shimane Univ, Sch Med, Dept Microbiol & Immunol, Izumo, Shimane 6938501, Japan
[7] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
[8] Osaka Univ, Grad Sch Engn, Div Appl Chem, Suita, Osaka 5650871, Japan
[9] Japan Synchrotron Radiat Res Inst, Sayo, Hyogo 6795198, Japan
[10] RIKEN SPring 8 Ctr, Kouto 1-1-1, Sayo, Hyogo 6795148, Japan
[11] Inst Stem Cell Biol & Regenerat Med, Bangalore 560065, Karnataka, India
[12] Univ Iowa, Dept Biol, Iowa City, IA 52242 USA
[13] Ctr Free Electron Laser Sci, D-22607 Hamburg, Germany
关键词
serial femtosecond crystallography; in vivo crystallography; X-ray free-electron laser; POLYHEDRA; CRYSTALS;
D O I
10.1098/rstb.2013.0497
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The serendipitous discovery of the spontaneous growth of protein crystals inside cells has opened the field of crystallography to chemically unmodified samples directly available from their natural environment. On the one hand, through in vivo crystallography, protocols for protein crystal preparation can be highly simplified, although the technique suffers from difficulties in sampling, particularly in the extraction of the crystals from the cells partly due to their small sizes. On the other hand, the extremely intense X-ray pulses emerging from X-ray free-electron laser (XFEL) sources, along with the appearance of serial femtosecond crystallography (SFX) is a milestone for radiation damage-free protein structural studies but requires micrometre-size crystals. The combination of SFX with in vivo crystallography has the potential to boost the applicability of these techniques, eventually bringing the field to the point where in vitro sample manipulations will no longer be required, and direct imaging of the crystals from within the cells will be achievable. To fully appreciate the diverse aspects of sample characterization, handling and analysis, SFX experiments at the Japanese SPring-8 angstrom compact free-electron laser were scheduled on various types of in vivo grown crystals. The first experiments have demonstrated the feasibility of the approach and suggest that future in vivo crystallography applications at XFELs will be another alternative to nano-crystallography.
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