Identification and phylogenetic analysis of the genus Syringa based on chloroplast genomic DNA barcoding

被引:3
|
作者
Yao, Ruihong [1 ]
Guo, Runfang [2 ]
Liu, Yuguang [1 ]
Kou, Ziqian [1 ]
Shi, Baosheng [1 ]
机构
[1] Hebei Agr Univ, Coll Landscape Architecture & Tourism, Baoding, Peoples R China
[2] Hebei Agr Univ, Dept Bioengn, Baoding, Peoples R China
来源
PLOS ONE | 2022年 / 17卷 / 07期
关键词
PLANTS; PSBA; TRNH; SEQUENCES; EVOLUTION; FAMILY; MATK; RBCL; L;
D O I
10.1371/journal.pone.0271633
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
DNA barcoding is a supplementary tool in plant systematics that is extensively used to resolve species-level controversies. This study assesses the significance of using two DNA barcoding loci (e.g., psbA-trnH and trnC-petN) in distinguishing 33 plant samples of the genus Syringa. Results showed that the average genetic distance K2P of psbA-trnH DNA marker was 0.0521, which is much higher than that of trnC-petN, which is 0.0171. A neighbor-joining phylogenetic tree based on psbA-trnH and trnC-petN indicated that the identification rate of psbA-trnH and trnC-petN alone were 75% and 62.5%, respectively. The barcode combination of psbA-trnH+trnC-petN could identify 33 samples of the genus Syringa accurately and effectively with an identification rate of 87.5%. The 33 Syringa samples were divided into four groups: Group I is series Syringa represented by Syringa oblata; Group II is series Villosae represented by Syringa villosa; Group III is series Pubescentes represented by Syringa meyeri; and Group IV is section Ligustrina represented by Syringa reticulata subsp. pekinensis. These research results provided strong evidence that the combinatorial barcode of psbA-trnH+trnC-petN had high-efficiency identification ability and application prospects in species of the genus Syringa.
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页数:13
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