Improving the Fitness of High-Dimensional Biomechanical Models via Data-Driven Stochastic Exploration

被引:8
|
作者
Santos, Veronica J. [1 ]
Bustamante, Carlos D. [1 ]
Valero-Cuevas, Francisco J. [1 ]
机构
[1] Cornell Univ, Sibley Sch Mech & Aerosp Engn, Ithaca, NY 14853 USA
基金
美国国家科学基金会;
关键词
Bayesian statistics; hiomechanical model; Markov chain Monte Carlo (MCMC); Metropolis-Hastings algorithm; parameter estimation; thumb; MUSCLE FORCE; ROTATION; THUMB;
D O I
10.1109/TBME.2008.2006033
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
The field of complex biomechanical modeling has begun to rely on Monte Carlo techniques to investigate the effects of parameter variability and measurement uncertainty on model outputs, search for optimal parameter combinations, and define model limitations. However, advanced stochastic methods to perform data-driven explorations, such as Markov chain Monte Carlo (MCMC), become necessary as the number of model parameters increases. Here, we demonstrate the feasibility and, what to our knowledge is, the first use of an MCMC approach to improve the fitness of realistically large biomechanical models. We used a Metropolis-Hastings algorithm to search increasingly complex parameter landscapes (3, 8, 24, and 36 dimensions) to uncover underlying distributions of anatomical parameters of a "truth model" of the human thumb on the basis of simulated kinematic data (thumbnail location, orientation, and linear and angular velocities) polluted by zero-mean, uncorrelated multivariate Gaussian "measurement noise." Driven by these data, ten Markov chains searched each model parameter space for the subspace that best fit the data (posterior distribution). As expected, the convergence time increased, more local minima were found, and marginal distributions broadened as the parameter space complexity increased. In the 36-D scenario, some chains found local minima but the majority of chains converged to the true posterior distribution (confirmed using a cross-validation dataset), thus demonstrating the feasibility and utility of these methods for realistically large biomechanical problems.
引用
收藏
页码:552 / 564
页数:13
相关论文
共 50 条
  • [1] Future of High-Dimensional Data-Driven Exoplanet Science
    Ford, Eric B.
    INTERNATIONAL MEETING ON HIGH-DIMENSIONAL DATA-DRIVEN SCIENCE (HD3-2015), 2016, 699
  • [2] High-Dimensional Scientific Data Exploration via Cinema
    Woodring, Jonathan
    Ahrens, James P.
    Patchett, John
    Tauxe, Cameron
    Rogers, David H.
    2017 IEEE WORKSHOP ON DATA SYSTEMS FOR INTERACTIVE ANALYSIS (DSIA), 2017,
  • [3] A data-driven approach to conditional screening of high-dimensional variables
    Hong, Hyokyoung G.
    Wang, Lan
    He, Xuming
    STAT, 2016, 5 (01): : 200 - 212
  • [4] Improving resilience of sensors in planetary exploration using data-driven models
    Kumar, Dileep
    Dominguez-Pumar, Manuel
    Sayrol-Clols, Elisa
    Torres, Josefina
    Marin, Mercedes
    Gomez-Elvira, Javier
    Mora, Luis
    Navarro, Sara
    Rodriguez-Manfredi, Jose
    MACHINE LEARNING-SCIENCE AND TECHNOLOGY, 2023, 4 (03):
  • [5] Efficient data-driven reduced-order models for high-dimensional multiscale dynamical systems
    Chakraborty, Souvik
    Zabaras, Nicholas
    COMPUTER PHYSICS COMMUNICATIONS, 2018, 230 : 70 - 88
  • [6] Incorporating Systems Structure in Data-Driven High-Dimensional Predictive Modeling
    Seabra dos Reis, Marco P.
    28TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING, 2018, 43 : 1039 - 1044
  • [7] Data-driven, variational model reduction of high-dimensional reaction networks
    Katsoulakis, Markos A.
    Vilanova, Pedro
    JOURNAL OF COMPUTATIONAL PHYSICS, 2020, 401
  • [8] DATA-DRIVEN RANKING AND SELECTION: HIGH-DIMENSIONAL COVARIATES AND GENERAL DEPENDENCE
    Li, Xiaocheng
    Zhang, Xiaowei
    Zheng, Zeyu
    2018 WINTER SIMULATION CONFERENCE (WSC), 2018, : 1933 - 1944
  • [9] Spatially adaptive sparse grids for high-dimensional data-driven problems
    Pflueger, Dirk
    Peherstorfer, Benjamin
    Bungartz, Hans-Joachim
    JOURNAL OF COMPLEXITY, 2010, 26 (05) : 508 - 522
  • [10] Online data-driven changepoint detection for high-dimensional dynamical systems
    Lin, Sen
    Mengaldo, Gianmarco
    Maulik, Romit
    CHAOS, 2023, 33 (10)