PhytoPath: an integrative resource for plant pathogen genomics

被引：33

作者：

Pedro, Helder ^{[1
]}

Maheswari, Uma ^{[1
]}

Urban, Martin ^{[2
]}

Irvine, Alistair George ^{[3
]}

Cuzick, Alayne ^{[2
]}

McDowall, Mark D. ^{[1
]}

Staines, Daniel M. ^{[1
]}

Kulesha, Eugene ^{[1
]}

Hammond-Kosack, Kim Elizabeth ^{[2
]}

Kersey, Paul Julian ^{[1
]}

机构：

[1] European Bioinformat Inst, European Mol Biol Lab, Hinxton CB10 1SD, Cambs, England

[2] Rothamsted Res, Dept Plant Biol & Crop Sci, Harpenden AL5 2JQ, Herts, England

[3] Rothamsted Res, Dept Computat & Syst Biol, Harpenden AL5 2JQ, Herts, England

来源：

NUCLEIC ACIDS RESEARCH | 2016年 / 44卷 / D1期

基金：

英国生物技术与生命科学研究理事会;

关键词：

SEQUENCE; DATABASE; TRANSCRIPTOME; DUPLICATION; ALIGNMENT;

D O I：

10.1093/nar/gkv1052

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

PhytoPath (www.phytopathdb.org) is a resource for genomic and phenotypic data from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an expertly curated catalog of genes with experimentally verified pathogenicity, with the Ensembl tools for data visualization and analysis. The resource is focused on fungi, protists (oomycetes) and bacterial plant pathogens that have genomes that have been sequenced and annotated. Genes with associated PHI-base data can be easily identified across all plant pathogen species using a BioMart-based query tool and visualized in their genomic context on the Ensembl genome browser. The PhytoPath resource contains data for 135 genomic sequences from 87 plant pathogen species, and 1364 genes curated for their role in pathogenicity and as targets for chemical intervention. Support for community annotation of gene models is provided using the WebApollo online gene editor, and we are working with interested communities to improve reference annotation for selected species.

引用

页码：D688 / D693

页数：6

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