Lamb wave-based molecular diagnosis using DNA hydrogel formation by rolling circle amplification (RCA) process

被引:26
|
作者
Nam, Jeonghun [1 ,2 ]
Jang, Woong Sik [1 ,2 ]
Kim, Jisu [3 ]
Lee, Hyukjin [3 ]
Lim, Chae Seung [1 ]
机构
[1] Korea Univ, Coll Med, Dept Lab Med, 226 Gamasan Ro, Seoul 08307, South Korea
[2] Korea Univ, Coll Med, Dept Emergency Med, Seoul, South Korea
[3] Ewha Womans Univ, Grad Sch Pharmaceut Sci, Coll Pharm, Seoul, South Korea
来源
关键词
Lamb wave; Molecular diagnosis; Gene amplification; DNA hydrogel; Acoustic streaming; ISOTHERMAL AMPLIFICATION;
D O I
10.1016/j.bios.2019.111496
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Recent developments in microfluidics enable the lab-on-a-chip-based molecular diagnosis. Rapid and accurate diagnosis of infectious diseases is critical for preventing the transmission of the disease. Here, we characterize a Lamb wave-based device using various parameters including the contact angle and viscosity of the sample droplet, the applied voltage, and the temperature increase. Additionally, we demonstrate the functionality of the Lamb wave-based device in clinical application. Optimal temperature for rolling circle amplification (RCA) process is 30 degrees C, and it was achieved by Lamb wave generation at 17 V. Gene amplification due to RCA process could be detected by viscosity increase due to DNA hydrogel formation in a sample droplet, which induced the acoustic streaming velocity of suspended particles to be decreased. In our Lamb wave-based device, isothermal amplification of target nucleic acids could be successfully detected within 30 min using 10 mu L of sessile droplet, and was validated by comparing that of commercial real-time fluorescence analysis. Our device enables simple and low-cost molecular diagnosis, which can be applied to resource-limited clinical settings.
引用
收藏
页数:5
相关论文
共 24 条
  • [1] Rolling circle amplification (RCA)-based DNA hydrogel
    Yao, Chi
    Zhang, Rui
    Tang, Jianpu
    Yang, Dayong
    NATURE PROTOCOLS, 2021, 16 (12) : 5460 - 5483
  • [2] Rolling circle amplification (RCA)-based DNA hydrogel
    Chi Yao
    Rui Zhang
    Jianpu Tang
    Dayong Yang
    Nature Protocols, 2021, 16 : 5460 - 5483
  • [3] Advances in Rolling Circle Amplification (RCA)-Based DNA-Functional Materials for Cancer Diagnosis and Therapy
    You, Xun
    Wang, Jing
    Guo, Xiaocui
    Yang, Dayong
    ADVANCED NANOBIOMED RESEARCH, 2024, 4 (03):
  • [4] Detection of Streptococcus mutans using Padlock Probe Based on Rolling Circle Amplification (RCA)
    Moreira, Monica
    Adamoski, Douglas
    Sun, Jiufeng
    Najafzadeh, Mohammad Javad
    Fidelis do Nascimento, Mariana Machado
    Gomes, Renata Rodrigues
    Barbieri, Dicler de St'Anna
    Glienke, Chirlei
    Klisiowicz, Debora do Rocio
    Vicente, Vania Aparecida
    BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY, 2015, 58 (01) : 54 - 60
  • [5] Gold Nanowire Based Electrical DNA Detection Using Rolling Circle Amplification
    Russell, Camilla
    Welch, Ken
    Jarvius, Jonas
    Cai, Yixiao
    Brucas, Rimantas
    Nikolajeff, Fredrik
    Svedlindh, Peter
    Nilsson, Mats
    ACS NANO, 2014, 8 (02) : 1147 - 1153
  • [6] Self-assembly of DNA Origami Using Rolling Circle Amplification Based DNA Nanoribbons
    Liu, Bing
    Ouyang, Xiangyuan
    Chao, Jie
    Liu, Huajie
    Zhao, Yun
    Fan, Chunhai
    CHINESE JOURNAL OF CHEMISTRY, 2014, 32 (02) : 137 - 141
  • [7] Rapid and ultrasensitive miRNA detection by combining endonuclease reactions in a rolling circle amplification (RCA)-based hairpin DNA fluorescent assay
    Lee, Yun Jin
    Jeong, Ji Yun
    Do, Ji Yoon
    Hong, Cheol Am
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2023, 415 (10) : 1991 - 1999
  • [8] Rapid and ultrasensitive miRNA detection by combining endonuclease reactions in a rolling circle amplification (RCA)–based hairpin DNA fluorescent assay
    Yun Jin Lee
    Ji Yun Jeong
    Ji Yoon Do
    Cheol Am Hong
    Analytical and Bioanalytical Chemistry, 2023, 415 : 1991 - 1999
  • [9] A Fluorescent DNA Hydrogel Aptasensor Based on the Self-Assembly of Rolling Circle Amplification Products for Sensitive Detection of Ochratoxin A
    Hao, Liling
    Wang, Wei
    Shen, Xueqing
    Wang, Shuliu
    Li, Qian
    An, Faliang
    Wu, Shijia
    JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2020, 68 (01) : 369 - 375
  • [10] Rapid molecular diagnosis of infectious viruses in microfluidics using DNA hydrogel formation
    Na, Wonhwi
    Nam, Dongwoo
    Lee, Hoyoon
    Shin, Sehyun
    BIOSENSORS & BIOELECTRONICS, 2018, 108 : 9 - 13