Phylogenetic relationships in the North African genus Hedysarum as inferred from ITS sequences of nuclear ribosomal DNA

被引:23
|
作者
Chennaoui, H. [1 ]
Marghali, S. [1 ]
Marrakchi, M. [1 ]
Trifi-Farah, N. [1 ]
机构
[1] Fac Sci Tunis, Lab Genet Mol Immunol & Biotechnol, Tunis 2092, Tunisia
关键词
Hedysarum; ITS; North Africa; nuclear ribosomal DNA; phylogeny;
D O I
10.1007/s10722-006-0001-9
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA were analysed to precise their length (637-643 bp) and resolve phylogenetic relationships among eight Mediterranean species of the genus Hedysarum (Fabaceae). The infra-specific variability levels of the ITS sequences of spontaneous population of H. coronarium proved a lack of polymorphism both in the length and in the sequences examined in this species. Hence, a consensus ITS sequence characterising each Hedysarum species has been investigated for analysis of inter-specific polymorphisms. The level of variation of ITS sequence was high enough to make the ITS1 and ITS2 a useful tool for phylogenetic reconstruction. However, ITS2 seems to be relatively more polymorphic and more informative than ITS1 regarding length or GC percent. The phylogenic relationships in the genus Hedysarum based on ITS1 and ITS2 sequences taken independently or together, are discussed in the context of current work in molecular biosystematics. Results exhibited the distinctiveness of the two H. spinosissimum subspecies (i.e. H. spinosissimum ssp. capitatum and H. spinosissimum ssp. spinosissimum). In addition, the great similarity of the ITS sequences between H. coronarium (the only cultivated species of the genus) and H. carnosum suggests the usefulness of the latter in selection programmes to improve pastoral production in semi-arid areas.
引用
收藏
页码:389 / 397
页数:9
相关论文
共 50 条
  • [1] Phylogenetic relationships in the North African genus Hedysarum as inferred from ITS sequences of nuclear ribosomal DNA
    H. Chennaoui
    S. Marghali
    M. Marrakchi
    N. Trifi-Farah
    [J]. Genetic Resources and Crop Evolution, 2007, 54 : 389 - 397
  • [2] Phylogenetic relationships among annual and perennial species of the genus Cicer as inferred from ITS sequences of nuclear ribosomal DNA
    Frediani, M
    Caputo, P
    [J]. BIOLOGIA PLANTARUM, 2005, 49 (01) : 47 - 52
  • [3] Phylogenetic relationships of diploid species in Aegilops inferred from the ITS sequences of nuclear ribosomal DNA
    Wang, C
    Shi, SH
    Wang, JB
    Zhong, Y
    [J]. ACTA BOTANICA SINICA, 2000, 42 (05): : 507 - 511
  • [4] Phylogenetic relationships in the Lejeuneaceae (Hepaticae) inferred using ITS sequences of nuclear ribosomal DNA
    Groth-Malonek, M
    Heinrichs, J
    Schneider, H
    Gradstein, SR
    [J]. ORGANISMS DIVERSITY & EVOLUTION, 2004, 4 (1-2) : 51 - 57
  • [5] Phylogenetic relationships of the Hamamelidaceae inferred from sequences of internal transcribed spacers (ITS) of nuclear ribosomal DNA
    Li, JH
    Bogle, AL
    Klein, AS
    [J]. AMERICAN JOURNAL OF BOTANY, 1999, 86 (07) : 1027 - 1037
  • [6] Phylogenetic relationships and biogeography of Stewartia (Camellioideae, Theaceae) inferred from nuclear ribosomal DNA ITS sequences.
    Li, JH
    Del Tredici, P
    Yang, SX
    Donoghue, MJ
    [J]. RHODORA, 2002, 104 (918) : 117 - 133
  • [7] Phylogenetic relationships of Empetraceae inferred from sequences of chloroplast gene matK and nuclear ribosomal DNA ITS region
    Li, JH
    Alexander, J
    Ward, T
    Del Tredici, P
    Nicholson, R
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2002, 25 (02) : 306 - 315
  • [8] Phylogenetic relationships of Sparassis inferred from nuclear and mitochondrial ribosomal DNA and RNA polymerase sequences
    Wang, Z
    Binder, M
    Dai, YC
    Hibbett, DS
    [J]. MYCOLOGIA, 2004, 96 (05) : 1015 - 1029
  • [9] Phylogenetic relationships in European Ceriporiopsis species inferred from nuclear and mitochondrial ribosomal DNA sequences
    Tomsovsky, Michal
    Menkis, Audrius
    Vasaitis, Rimvydas
    [J]. FUNGAL BIOLOGY, 2010, 114 (04) : 350 - 358
  • [10] Phylogenetic relationships of three hymenolepidid species inferred from nuclear ribosomal and mitochondrial DNA sequences
    Okamoto, M
    Agatsuma, T
    Kurosawa, T
    Ito, A
    [J]. PARASITOLOGY, 1997, 115 : 661 - 666