Elevated levels of phytoplankton were observed at the Northern California coastal upwelling ecosystem studied as part of the CoOP-WEST project during monthly summer surveys in 2000, 2001 and 2002. The high concentrations of chlorophyll were made up mostly of larger cells; the phytoplankton communities that resulted were dominated by centric diatoms. The highest chlorophyll a concentrations were observed when large diatoms or small colony-forming species dominated the assemblages. In contrast, when smaller nano-flagellates and picoplankton were dominant, total chlorophyll a concentrations were over four or five-fold lower than when diatoms were prevalent, illustrating the importance of large diatoms to total phytoplankton biomass. Each year, when chlorophyll concentrations were greatest, Chaetoceros species created a Chaetoceros-dominated system. A few other genera contributed to the upwelling diatom community, mostly the centric diatoms Asterionella, Thalassiosira, Rhizosolenia (including Guinardia and Proboscia), and the permate Nitzschia. These diatoms have been described in other coastal upwelling ecosystems, and at this study site form a functional group that are apparently well adapted to the high-nutrient, turbulent conditions that are typical of these coastal regions. (c) 2006 Published by Elsevier Ltd.