EpHLA: An innovative and user-friendly software automating the HLAMatchmaker algorithm for antibody analysis

被引:16
|
作者
da Mata Sousa, Luiz Claudio Demes [1 ,2 ]
Sales Filho, Herton Luiz Alves [1 ]
Carrascosa Von Glehn, Cristina de Queiroz [3 ]
da Silva, Adalberto Socorro [1 ]
dos Santos Neto, Pedro de Alcantara [2 ]
Fonseca de Castro, Jose Adail [1 ]
Hadad do Monte, Semiramis Jamil [1 ]
机构
[1] Univ Fed Piaui, Immunogenet & Mol Biol Lab, BR-64049550 Teresina, PI, Brazil
[2] Univ Fed Piaui, Dept Informat & Stat, Teresina, PI, Brazil
[3] Pontificia Univ Catal Parana, Immunogenenet Lab, BR-80000215 Curitiba, PR, Brazil
关键词
Software; HLA; Antibody; Epitope; KIDNEY-TRANSPLANTATION;
D O I
10.1016/j.trim.2011.08.008
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The global challenge for solid organ transplantation programs is to distribute organs to the highly sensitized recipients. The purpose of this work is to describe and test the functionality of the EpHLA software, a program that automates the analysis of acceptable and unacceptable HLA epitopes on the basis of the HLAMatchmaker algorithm. HLAMatchmaker considers small configurations of polymorphic residues referred to as eplets as essential components of HLA-epitopes. Currently, the analyses require the creation of temporary files and the manual cut and paste of laboratory tests results between electronic spreadsheets, which is time-consuming and prone to administrative errors. Results: The EpHLA software was developed in Object Pascal programming language and uses the HLAMatchmaker algorithm to generate histocompatibility reports. The automated generation of reports requires the integration of files containing the results of laboratory tests (HLA typing, anti-HIA antibody signature) and public data banks (NMDP, IMGT). The integration and the access to this data were accomplished by means of the framework called eDAFramework. The eDAFramework was developed in Object Pascal and PHP and it provides data access functionalities for software developed in these languages. The tool functionality was successfully tested in comparison to actual, manually derived reports of patients from a renal transplantation program with related donors. Conclusions: We successfully developed software, which enables the automated definition of the epitope specificities of HLA antibodies. This new tool will benefit the management of recipient/donor pairs selection for highly sensitized patients. (C) 2011 Elsevier B.V. All rights reserved.
引用
收藏
页码:210 / 216
页数:7
相关论文
共 50 条
  • [1] User-friendly software for Mossbauer spectrum analysis
    Klencsar, Z
    Kuzmann, E
    Vertes, A
    [J]. JOURNAL OF RADIOANALYTICAL AND NUCLEAR CHEMISTRY-ARTICLES, 1996, 210 (01): : 105 - 118
  • [2] A USER-FRIENDLY ALGORITHM
    DWYER, B
    [J]. COMMUNICATIONS OF THE ACM, 1981, 24 (09) : 556 - 561
  • [3] User-friendly software for the analysis of brain lesions (ABLe)
    Solomon, Jeffrey
    Raymont, Vanessa
    Braun, Allen
    Butman, John A.
    Grafman, Jordan
    [J]. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2007, 86 (03) : 245 - 254
  • [4] User-friendly and versatile software for analysis of protein hydrophobicity
    Han, B
    Tashjian, AH
    [J]. BIOTECHNIQUES, 1998, 25 (02) : 256 - +
  • [5] User-friendly software for Mössbauer spectrum analysis
    Klencsár, Z.
    Kuzmann, E.
    Vértes, A.
    [J]. Journal of Radioanalytical and Nuclear Chemistry, 1996, 210 (01): : 105 - 118
  • [6] User-friendly genetic algorithm
    Shanthini, A. P.
    Antonysamy, A.
    Chelvam, T. Tamil
    [J]. JOURNAL OF DISCRETE MATHEMATICAL SCIENCES & CRYPTOGRAPHY, 2007, 10 (04): : 517 - 536
  • [7] USER-FRIENDLY SOFTWARE FOR INFORMATION DISPLAY
    BIVINSNOERR, KT
    NOERR, PL
    [J]. PROCEEDINGS OF THE AMERICAN SOCIETY FOR INFORMATION SCIENCE, 1983, 20 : 51 - 51
  • [8] DESIGNING USER-FRIENDLY SOFTWARE SYSTEMS
    OMOTAYO, OR
    [J]. DATA PROCESSING, 1984, 26 (05): : 16 - 18
  • [9] A new user-friendly software package
    不详
    [J]. MATERIALS & DESIGN, 1995, 16 (05): : 299 - 299
  • [10] Making software agents user-friendly
    Mahmoud, Qusay H.
    Yu, Leslie
    [J]. COMPUTER, 2006, 39 (07) : 96 - +