Development and analytical validation of real-time PCR for the detection ofStreptococcus agalactiaein pregnant women

被引:6
|
作者
Escobar, Daniel F. [1 ]
Diaz-Dinamarca, Diego A. [1 ,2 ]
Hernandez, Carlos F. [1 ,3 ]
Soto, Daniel A. [1 ]
Manzo, Ricardo A. [1 ]
Alarcon, Pedro, I [4 ]
Pinto, Camila H. [1 ]
Bastias, Diego N. [1 ,2 ,5 ,6 ]
Oberg-Bravo, Carolayn N. [1 ,5 ,6 ]
Rojas, Robert [7 ]
Illanes, Sebastian E. [8 ,9 ]
Kalergis, Alexis M. [2 ,10 ]
Vasquez, Abel E. [1 ,5 ,6 ,11 ,12 ]
机构
[1] Inst Salud Publ Chile, Secc Biotecnol, Santiago, Chile
[2] Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Inst Immunol & Immunotherapy, Dept Genet Mol & Microbiol, Santiago, Chile
[3] Univ Chile, Fac Ciencias Quim & Farmaceut, Dept Bioquim & Biol Mol, Santos Dumont 964, Santiago 8380494, Chile
[4] Inst Salud Publ Chile, Secc Bacteriol, Dept Biomed, Santiago, Chile
[5] Univ Santo Tomas, Fac Ciencias, Escuela Biotecnol, Santiago, Chile
[6] Univ Santo Tomas, Fac Ciencias, Escuela Tecnol Med, Santiago, Chile
[7] Univ Mayor, Ctr Genorn & Bioinformat, Santiago, Chile
[8] Univ Los Andes, Fac Med, Dept Obstet & Gynecol, Santiago, Chile
[9] Clin Davila, Dept Obstet & Gynecol, Santiago, Chile
[10] Pontificia Univ Catolica Chile, Fac Ciencias Biol, Fac Med, Dept Endocrinol,Dept Genet Mol & Microbiol, Santiago, Chile
[11] Univ San Sebastian, Fac Med & Ciencia, Santiago, Chile
[12] Inst Salud Publ Chile, Av Marathon, Santiago 1000, Chile
关键词
Group B Streptococcus; qPCR; Surface immunogenic protein; Analytical validation; Bacterial detection; GROUP-B STREPTOCOCCUS; POLYMERASE-CHAIN-REACTION; VAGINAL SWABS; COLONIZATION; DISEASE; IDENTIFICATION; PROTEIN; ASSAYS; GBS;
D O I
10.1186/s12884-020-03038-z
中图分类号
R71 [妇产科学];
学科分类号
100211 ;
摘要
Background Group BStreptococcus(GBS) is the leading cause of invasive neonatal infection. In this study, we aimed to evaluate the analytical validation of qualitative real-time polymerase chain reaction (qPCR) as a means to detect GBS. Methods Genomic DNA (gDNA) was purified from 12 ATCC bacterial strains, two belonging to GBS and the remainder acting as negative controls. Additionally, gDNA was isolated from 21 strains of GBS from various serotypes (Ia, Ib and II-VIII). All gDNA was used to evaluate the analytical validation of the qPCR method employing a specific Taqman probe. Inclusivity, exclusivity, anticipated reportable range, the limit of detection and robustness were evaluated. The methods used are described in international guidelines and other existing reports. The performance of this qPCR method for detecting GBS was compared to other microbiological methods used with vaginal-rectal samples from pregnant women. Results Our qPCR method for detecting GBS was analytically validated. It has a limit of detection of 0.7 GE/mu L and 100% analytical specificity. It detects all strains of GBS with the same level of performance as microbiological methods. Conclusion Data suggest that this qPCR method performs adequately as a means to detect GBS in vaginal-rectal swabs from pregnant women.
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页数:10
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