Genotyping microsatellites in next-generation sequencing data

被引：8
|
作者：
Dashnow, Harriet [1 ,2 ,3 ]
Tan, Susan [4 ]
Das, Debjani [4 ]
Easteal, Simon [4 ]
Oshlack, Alicia [2 ,3 ]
机构：
[1] Life Sci Computat Ctr, Victorian Life Sci Computat Initiat, Carlton, Vic, Australia
[2] Univ Melbourne, Parkville, Vic 3052, Australia
[3] Murdoch Childrens Res Inst, Parkville, Vic, Australia
[4] Australian Natl Univ, John Curtin Sch Med Res, Canberra, ACT 2601, Australia
来源：
BMC BIOINFORMATICS | 2015年 / 16卷
关键词：
MECHANISMS;
D O I：
10.1186/1471-2105-16-S2-A5
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
引用
收藏
页数：2
相关论文
共 50 条
  • [1] Genotyping microsatellites in next-generation sequencing data
    Harriet Dashnow
    Susan Tan
    Debjani Das
    Simon Easteal
    Alicia Oshlack
    [J]. BMC Bioinformatics, 16
  • [2] RH genotyping by next-generation sequencing
    Khandelwal, Aditi
    Zittermann, Sandra
    Sierocinski, Thomas
    Montemayor, Celina
    [J]. ANNALS OF BLOOD, 2023, 8
  • [3] RH genotyping by next-generation sequencing
    Khandelwal, Aditi
    Zittermann, Sandra
    Sierocinski, Thomas
    Montemayor, Celina
    [J]. ANNALS OF BLOOD, 2023, 8
  • [4] HLAscan: genotyping of the HLA region using next-generation sequencing data
    Ka, Sojeong
    Lee, Sunho
    Hong, Jonghee
    Cho, Yangrae
    Sung, Joohon
    Kim, Han-Na
    Kim, Hyung-Lae
    Jung, Jongsun
    [J]. BMC BIOINFORMATICS, 2017, 18
  • [5] HLAscan: genotyping of the HLA region using next-generation sequencing data
    Sojeong Ka
    Sunho Lee
    Jonghee Hong
    Yangrae Cho
    Joohon Sung
    Han-Na Kim
    Hyung-Lae Kim
    Jongsun Jung
    [J]. BMC Bioinformatics, 18
  • [6] NGSNGS: next-generation simulator for next-generation sequencing data
    Henriksen, Rasmus Amund
    Zhao, Lei
    Korneliussen, Thorfinn Sand
    [J]. BIOINFORMATICS, 2023, 39 (01)
  • [7] A framework for variation discovery and genotyping using next-generation DNA sequencing data
    Mark A DePristo
    Eric Banks
    Ryan Poplin
    Kiran V Garimella
    Jared R Maguire
    Christopher Hartl
    Anthony A Philippakis
    Guillermo del Angel
    Manuel A Rivas
    Matt Hanna
    Aaron McKenna
    Tim J Fennell
    Andrew M Kernytsky
    Andrey Y Sivachenko
    Kristian Cibulskis
    Stacey B Gabriel
    David Altshuler
    Mark J Daly
    [J]. Nature Genetics, 2011, 43 : 491 - 498
  • [8] A framework for variation discovery and genotyping using next-generation DNA sequencing data
    DePristo, Mark A.
    Banks, Eric
    Poplin, Ryan
    Garimella, Kiran V.
    Maguire, Jared R.
    Hartl, Christopher
    Philippakis, Anthony A.
    del Angel, Guillermo
    Rivas, Manuel A.
    Hanna, Matt
    McKenna, Aaron
    Fennell, Tim J.
    Kernytsky, Andrew M.
    Sivachenko, Andrey Y.
    Cibulskis, Kristian
    Gabriel, Stacey B.
    Altshuler, David
    Daly, Mark J.
    [J]. NATURE GENETICS, 2011, 43 (05) : 491 - +
  • [9] Genotyping 1000 yeast strains by next-generation sequencing
    Wilkening, Stefan
    Tekkedil, Manu M.
    Lin, Gen
    Fritsch, Emilie S.
    Wei, Wu
    Gagneur, Julien
    Lazinski, David W.
    Camilli, Andrew
    Steinmetz, Lars M.
    [J]. BMC GENOMICS, 2013, 14
  • [10] Genotyping 1000 yeast strains by next-generation sequencing
    Stefan Wilkening
    Manu M Tekkedil
    Gen Lin
    Emilie S Fritsch
    Wu Wei
    Julien Gagneur
    David W Lazinski
    Andrew Camilli
    Lars M Steinmetz
    [J]. BMC Genomics, 14
12345