Robustness and Information Propagation in Attractors of Random Boolean Networks

被引:8
|
作者
Lloyd-Price, Jason [1 ]
Gupta, Abhishekh [1 ]
Ribeiro, Andre S. [1 ]
机构
[1] Tampere Univ Technol, Dept Signal Proc, Computat Syst Biol Res Grp, Lab Biosyst Dynam, FIN-33101 Tampere, Finland
来源
PLOS ONE | 2012年 / 7卷 / 07期
基金
芬兰科学院;
关键词
GENETIC NETWORK; MODELS; CELLS;
D O I
10.1371/journal.pone.0042018
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Attractors represent the long-term behaviors of Random Boolean Networks. We study how the amount of information propagated between the nodes when on an attractor, as quantified by the average pairwise mutual information (I-A), relates to the robustness of the attractor to perturbations (R-A). We find that the dynamical regime of the network affects the relationship between I-A and R-A. In the ordered and chaotic regimes, I-A is anti-correlated with R-A, implying that attractors that are highly robust to perturbations have necessarily limited information propagation. Between order and chaos (for so-called "critical" networks) these quantities are uncorrelated. Finite size effects cause this behavior to be visible for a range of networks, from having a sensitivity of 1 to the point where I-A is maximized. In this region, the two quantities are weakly correlated and attractors can be almost arbitrarily robust to perturbations without restricting the propagation of information in the network.
引用
收藏
页数:6
相关论文
共 50 条
  • [1] Random maps and attractors in random Boolean networks
    Samuelsson, B
    Troein, C
    [J]. PHYSICAL REVIEW E, 2005, 72 (04):
  • [2] Number of attractors in random Boolean networks
    Drossel, B
    [J]. PHYSICAL REVIEW E, 2005, 72 (01):
  • [3] Properties of attractors of canalyzing random Boolean networks
    Paul, U
    Kaufman, V
    Drossel, B
    [J]. PHYSICAL REVIEW E, 2006, 73 (02):
  • [4] Attractors and Basins of Asynchronous Random Boolean Networks
    Yang Meng
    Chu Tianguang
    [J]. 2011 30TH CHINESE CONTROL CONFERENCE (CCC), 2011, : 6392 - 6397
  • [5] A Study on Attractors of Generalized Asynchronous Random Boolean Networks
    Trinh, Van Giang
    Hiraishi, Kunihiko
    [J]. IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, 2020, E103A (08) : 987 - 994
  • [6] The Properties of Pseudo-Attractors in Random Boolean Networks
    Villani, Marco
    Balugani, Matteo
    Serra, Roberto
    [J]. ARTIFICIAL LIFE AND EVOLUTIONARY COMPUTATION, WIVACE 2023, 2024, 1977 : 67 - 74
  • [7] Evaluation of attractors and basins of asynchronous random Boolean networks
    Yang, Meng
    Chu, Tianguang
    [J]. PHYSICAL REVIEW E, 2012, 85 (05):
  • [8] Random sampling versus exact enumeration of attractors in random Boolean networks
    Berdahl, Andrew
    Shreim, Amer
    Sood, Vishal
    Paczuski, Maya
    Davidsen, Joern
    [J]. NEW JOURNAL OF PHYSICS, 2009, 11
  • [9] Measures for information propagation in Boolean networks
    Ramo, Pauli
    Kauffman, Stuart
    Kesseli, Juha
    Yli-Harja, Olli
    [J]. PHYSICA D-NONLINEAR PHENOMENA, 2007, 227 (01) : 100 - 104
  • [10] Time out of joint: Attractors in asynchronous random Boolean networks
    Harvey, I
    Bossomaier, T
    [J]. FOURTH EUROPEAN CONFERENCE ON ARTIFICIAL LIFE, 1997, : 67 - 75