Ancient genomes from present-day France unveil 7,000 years of its demographic history

被引:53
|
作者
Brunel, Samantha [1 ]
Bennett, E. Andrew [1 ]
Cardin, Laurent [1 ,2 ]
Garraud, Damien [1 ,2 ]
Emam, Helene Barrand [3 ,4 ]
Beylier, Alexandre [5 ,6 ]
Boulestin, Bruno [7 ]
Chenal, Fanny [4 ,8 ]
Ciesielski, Elsa [6 ]
Convertini, Fabien [8 ]
Dedet, Bernard [6 ]
Desbrosse-Degobertiere, Stephanie [8 ]
Desenne, Sophie [8 ,9 ]
Dubouloz, Jerome [9 ]
Duday, Henri [7 ]
Escalon, Gilles [8 ]
Fabre, Veronique [8 ]
Gailledrat, Eric [6 ]
Gandelin, Muriel [8 ,10 ]
Gleize, Yves [8 ]
Goepfert, Sebastien [3 ]
Guilaine, Jean [10 ,11 ]
Hachem, Lamys [8 ,9 ]
Ilett, Michael [9 ]
Lambach, Francois [7 ]
Maziere, Florent [8 ]
Perrin, Bertrand [3 ,4 ]
Plouin, Suzanne [4 ]
Pinard, Estelle [8 ,9 ]
Praud, Ivan [8 ,9 ]
Richard, Isabelle [8 ,12 ]
Riquier, Vincent [8 ,9 ]
Roure, Rejane [6 ]
Sendra, Benoit [8 ]
Thevenet, Corinne [8 ,9 ]
Thiol, Sandrine [8 ]
Vauquelin, Elisabeth [8 ]
Vergnaud, Luc [3 ,4 ]
Grange, Thierry [1 ]
Geigl, Eva-Maria [1 ]
Pruvost, Melanie [1 ,7 ]
机构
[1] Univ Paris, Inst Jacques Monod, CNRS, UMR 7592, F-75205 Paris 13, France
[2] Inst Rech Criminelle Gendarmerie Natl, F-95000 Pontoise, France
[3] ANTEA Archeol, F-68440 Habsheim, France
[4] Univ Strasbourg, CNRS, UMR 7044 Archeol & Histoire ancienne Mediterrane, F-67083 Strasbourg, France
[5] Serv Archeol Sete Agglopole Mediterranee, F-34110 Frontignan, France
[6] Univ Paul Valery Montpellier 3, CNRS, UMR 5140 Archeol Societes Mediterraneennes ASM, F-34199 Montpellier, France
[7] Univ Bordeaux, CNRS, UMR 5199 Prehist Actuel Culture Environm & Anthro, F-33615 Pessac, France
[8] INRAP, F-75685 Paris 14, France
[9] Univ Paris 1 Pantheon Sorbonne, CNRS, IUMR 8215 Trajectoires, F-92023 Nanterre, France
[10] Univ Toulouse II, CNRS, UMR 5608, TRACES, F-31058 Toulouse, France
[11] Coll France, F-75231 Paris 05, France
[12] Univ Nice Sophia Antipolis, CNRS, UMR 7264 Cultures & Environm Prehist, Antiqu Moyen Age CEPAM, F-06357 Nice 4, France
关键词
paleogenomics; migration; Neolithic; population genomics; protohistory; MITOCHONDRIAL-DNA; ASSOCIATION; FRAMEWORK; PATTERNS; SEQUENCE; SUGGEST; IMMUNE;
D O I
10.1073/pnas.1918034117
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Genomic studies conducted on ancient individuals across Europe have revealed how migrations have contributed to its present genetic landscape, but the territory of present-day France has yet to be connected to the broader European picture. We generated a large dataset comprising the complete mitochondrial genomes, Y-chromosome markers, and genotypes of a number of nuclear loci of interest of 243 individuals sampled across present-day France over a period spanning 7,000 y, complemented with a partially overlapping dataset of 58 low-coverage genomes. This panel provides a high-resolution transect of the dynamics of maternal and paternal lineages in France as well as of autosomal genotypes. Parental lineages and genomic data both revealed demographic patterns in France for the Neolithic and Bronze Age transitions consistent with neighboring regions, first with a migration wave of Anatolian farmers followed by varying degrees of admixture with autochthonous hunter-gatherers, and then substantial gene flow from individuals deriving part of their ancestry from the Pontic steppe at the onset of the Bronze Age. Our data have also highlighted the persistence of Magdalenian-associated ancestry in hunter-gatherer populations outside of Spain and thus provide arguments for an expansion of these populations at the end of the Paleolithic Period more northerly than what has been described so far. Finally, no major demographic changes were detected during the transition between the Bronze and Iron Ages.
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页码:12791 / 12798
页数:8
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