Analysis of protein-ligand interactions from titrations and nuclear magnetic resonance relaxation dispersions

被引:1
|
作者
Bjorklund, Emil [1 ]
du Rietz, Anna [2 ]
Lundstrom, Patrik [1 ]
机构
[1] Linkoping Univ, Dept Phys Chem & Biol, Div Chem, SE-58183 Linkoping, Sweden
[2] Linkoping Univ, Dept Phys Chem & Biol, Div Mol Surface Phys & Nanosci, Linkoping, Sweden
关键词
dissociation constant; protein-ligand interactions; relaxation dispersion; titration; SPECTROSCOPY; BINDING;
D O I
10.1002/pro.4240
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We present PLIS, a publicly available, open-source software for the determination of protein-ligand dissociation constants that can be used to characterize biological processes or to shed light on biophysical aspects of interactions. PLIS can analyze data from titration experiments monitored by for instance fluorescence spectroscopy or from nuclear magnetic resonance relaxation dispersion experiments. In addition to analysis of experimental data, PLIS includes functionality for generation of synthetic data, useful for understanding how different parameters effect the data in order to better analyze experiments.
引用
收藏
页码:301 / 307
页数:7
相关论文
共 50 条
  • [1] Investigating Protein-Ligand Interactions by Solution Nuclear Magnetic Resonance Spectroscopy
    Becker, Walter
    Bhattiprolu, Krishna
    Gubensaek, Nina
    Zangger, Klaus
    CHEMPHYSCHEM, 2018, 19 (08) : 894 - 894
  • [2] Nuclear Magnetic Resonance of Hyperpolarized Fluorine for Characterization of Protein-Ligand Interactions
    Lee, Youngbok
    Zeng, Haifeng
    Ruedisser, Simon
    Gosser, Alvar D.
    Hilty, Christian
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (42) : 17448 - 17451
  • [3] STUDIES ON RAPID PROTEIN-LIGAND INTERACTIONS USING NUCLEAR MAGNETIC-RESONANCE
    MARKAU, K
    HOPPE-SEYLERS ZEITSCHRIFT FUR PHYSIOLOGISCHE CHEMIE, 1975, 356 (03): : 252 - 253
  • [4] Fundamental investigation of protein-ligand interactions in multimodal chromatography using nuclear magnetic resonance spectroscopy
    Srinivasan, Kartik
    Parimal, Siddharth
    McCallum, Scott
    Cramer, Steven M.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 245
  • [5] Detection of Protein-Ligand Interactions by 19F Nuclear Magnetic Resonance Using Hyperpolarized Water
    Hu, Jiandu
    Kim, Jihyun
    Hilty, Christian
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2022, 13 (17): : 3819 - 3823
  • [6] Visual Analysis of protein-ligand interactions
    Vazquez, P.
    Hermosilla, P.
    Guallar, V.
    Estrada, J.
    Vinacua, A.
    COMPUTER GRAPHICS FORUM, 2018, 37 (03) : 391 - 402
  • [7] Protein-ligand interactions
    Jelinska, Aldona
    Lewandrowska, Anna
    Holyst, Robert
    PROTEIN SCIENCE, 2015, 24 : 102 - 103
  • [8] Protein-Ligand Interactions
    Brecker, Lothar
    Husa, Markus
    NACHRICHTEN AUS DER CHEMIE, 2013, 61 (02) : 153 - 155
  • [9] Analysis of protein-ligand interactions by fluorescence polarization
    Rossi, Ana M.
    Taylor, Colin W.
    NATURE PROTOCOLS, 2011, 6 (03) : 365 - 387
  • [10] Quantitative analysis of protein-ligand interactions by NMR
    Furukawa, Ayako
    Konuma, Tsuyoshi
    Yanaka, Saeko
    Sugase, Kenji
    PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2016, 96 : 47 - 57