Towards the fully automated monitoring of ecological communities

被引:66
|
作者
Besson, Marc [1 ,2 ]
Alison, Jamie [3 ,4 ]
Bjerge, Kim [5 ]
Gorochowski, Thomas E. [1 ,6 ]
Hoye, Toke T. [3 ,7 ]
Jucker, Tommaso [1 ]
Mann, Hjalte M. R. [3 ,7 ]
Clements, Christopher F. [1 ]
机构
[1] Univ Bristol, Sch Biol Sci, Bristol, Avon, England
[2] Sorbonne Univ, BIOM, CNRS, UMR Biol Organismes Marins, Banyuls Sur Mer, France
[3] Aarhus Univ, Dept Ecosci, Aarhus, Denmark
[4] UK Ctr Ecol & Hydrol, Bangor, Gwynedd, Wales
[5] Aarhus Univ, Dept Elect & Comp Engn, Aarhus, Denmark
[6] Univ Bristol, Sch Chem, BrisEngBio, Bristol BS8 1TS, Avon, England
[7] Aarhus Univ, Arctic Res Ctr, Aarhus, Denmark
基金
英国工程与自然科学研究理事会; 英国自然环境研究理事会;
关键词
community ecology; computer vision; deep learning; high-resolution monitoring; remote sensing; RESOLUTION SATELLITE IMAGERY; CAMERA TRAPS; FLOW-CYTOMETRY; BIG-DATA; WILDLIFE; FOREST; MAMMALS; CLASSIFICATION; CHALLENGES; PLATFORM;
D O I
10.1111/ele.14123
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
High-resolution monitoring is fundamental to understand ecosystems dynamics in an era of global change and biodiversity declines. While real-time and automated monitoring of abiotic components has been possible for some time, monitoring biotic components-for example, individual behaviours and traits, and species abundance and distribution-is far more challenging. Recent technological advancements offer potential solutions to achieve this through: (i) increasingly affordable high-throughput recording hardware, which can collect rich multidimensional data, and (ii) increasingly accessible artificial intelligence approaches, which can extract ecological knowledge from large datasets. However, automating the monitoring of facets of ecological communities via such technologies has primarily been achieved at low spatiotemporal resolutions within limited steps of the monitoring workflow. Here, we review existing technologies for data recording and processing that enable automated monitoring of ecological communities. We then present novel frameworks that combine such technologies, forming fully automated pipelines to detect, track, classify and count multiple species, and record behavioural and morphological traits, at resolutions which have previously been impossible to achieve. Based on these rapidly developing technologies, we illustrate a solution to one of the greatest challenges in ecology: the ability to rapidly generate high-resolution, multidimensional and standardised data across complex ecologies.
引用
收藏
页码:2753 / 2775
页数:23
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