Alsobacter soli sp. nov., a novel bacterium isolated from paddy soil, emended description of the genus Alsobacter and description of the family Alsobacteraceae fam. nov.

被引:7
|
作者
Sun, Lina [1 ,2 ]
Liu, Hongming [3 ]
Chen, Wei [1 ,4 ]
Huang, Kaihua [1 ,5 ]
Lyu, Weiguang [1 ,2 ,6 ]
Gao, Xinhua [1 ,5 ]
机构
[1] Shanghai Acad Agr Sci, Ecoenvironm Protect Res Inst, Shanghai 201403, Peoples R China
[2] SERCLA, Shanghai 201403, Peoples R China
[3] Anhui Normal Univ, Inst Mol Biol & Biotechnol, Wuhu 241000, Peoples R China
[4] Shanghai Key Lab Hort Technol, Shanghai 201403, Peoples R China
[5] Environm Protect Monitoring Stn Shanghai, Shanghai 201403, Peoples R China
[6] Minist Agr, Shanghai Agr Environm & Farmland Conservat Expt S, Shanghai 201403, Peoples R China
关键词
new taxa; Alsobacter; ACID;
D O I
10.1099/ijsem.0.003088
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Strain SH9(T), an aerobic bacterium isolated from a paddy soil sample collected in Shanghai, China, was characterized using a polyphasic approach. It grew optimally at pH 7.0, temperatures of 30-35 degrees C and in the presence of 1 % (w/v) NaCl. Comparative analysis of 16S rRNA gene sequences showed that strain SH9(T) fell within the genus Alsobacter, forming a clear cluster with the type strain of Alsobacter metallidurans, with which it exhibited a 16S rRNA gene sequence similarity value of 98.5 %. Cells of strain SH9(T) were Gram-stain-negative, motile, non-spore-forming, rod-shaped, positive for catalase and oxidase activity, and negative for atmospheric nitrogen fixation and nitrate reduction. The strain was a chemo-organotrophic bacterium, incapable of growth on C1 substrates. The chemotaxonomic properties of strain SH9 T were consistent with those of the genus Alsobacter: the predominant ubiquinone was Q-10, and the major fatty acid was summed feature 8 (C-18:1 omega 7c and/or C-18:1 omega 6c). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine and phosphatidylmonomethylethanolamine. The DNA G+C content was 68.5 mol%. Strain SH9(T) exhibited a DNA-DNA relatedness level of 20 +/- 2 % with A. metallidurans NBRC 107718(T). Based on the data obtained, strain SH9(T) represents a novel species of the genus Alsobacter, for which the name Alsobacter soli sp. nov. is proposed. The type strain is SH9(T) (=JCM 32501(T)=CCTCC AB 2017284(T)). A new family, Alsobacteraceae fam. nov., is also proposed encompassing strain SH9(T) and Alsobacter metallidurans NBRC 107718(T).
引用
收藏
页码:3902 / 3907
页数:6
相关论文
共 50 条
  • [1] Vallicoccus soli gen. nov., sp. nov., a novel actinobacterium isolated from soil, and description of Vallicoccaceae fam. nov., Motilibacterales ord. nov.
    Feng, Yu-Zhou
    Chunyu, Wei-Xun
    Liang, Rui
    Hahnke, Richard L.
    Schumann, Peter
    Zhao, Yu-Rong
    Gao, Sheng
    Yin, Min
    Ji, Yang
    Sun, Le
    Zhi, Xiao-Yang
    Tang, Shu-Kun
    ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2020, 113 (12): : 2155 - 2165
  • [2] Vallicoccus soli gen. nov., sp. nov., a novel actinobacterium isolated from soil, and description of Vallicoccaceae fam. nov., Motilibacterales ord. nov.
    Yu-Zhou Feng
    Wei-Xun Chunyu
    Rui Liang
    Richard L. Hahnke
    Peter Schumann
    Yu-Rong Zhao
    Sheng Gao
    Min Yin
    Yang Ji
    Le Sun
    Xiao-Yang Zhi
    Shu-Kun Tang
    Antonie van Leeuwenhoek, 2020, 113 : 2155 - 2165
  • [3] Oryzihumus soli sp nov., isolated from soil and emended description of the genus Oryzihumus
    Kim, Dong-Uk
    Kim, Song-Gun
    Lee, Hyosun
    Parka, A. -Young
    Ka, Jong-Ok
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (10) : 3960 - 3964
  • [4] Baekduia soli gen. nov., sp. nov., a novel bacterium isolated from the soil of Baekdu Mountain and proposal of a novel family name, Baekduiaceae fam. nov.
    Dong-Shan An
    Muhammad Zubair Siddiqi
    Kyoung-Ho Kim
    Hong-Shan Yu
    Wan-Taek Im
    Journal of Microbiology, 2018, 56 : 24 - 29
  • [5] Falsochrobactrum shanghaiense sp. nov., isolated from paddy soil and emended description of the genus Falsochrobactrum
    Sun, Lina
    Yao, Li
    Gao, Xinhua
    Huang, Kaihua
    Bai, Naling
    Lyu, Weiguang
    Chen, Wei
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (03) : 778 - 782
  • [6] Stenotrophobium rhamnosiphilum gen. nov., sp. nov., isolated from a glacier, proposal of Steroidobacteraceae fam. nov. in Nevskiales and emended description of the family Nevskiaceae
    Liu, Qing
    Liu, Hong-Can
    Zhou, Yu-Guang
    Xin, Yu-Hua
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (05) : 1404 - 1410
  • [7] Description of Symbiobacterium ostreiconchae sp nov., Symbiobacterium turbinis sp nov and Symbiobacterium terraclitae sp nov., isolated from shellfish, emended description of the genus Symbiobacterium and proposal of Symbiobacteriaceae fam. nov.
    Shiratori-Takano, Hatsumi
    Akita, Kae
    Yamada, Kazune
    Itoh, Takashi
    Sugihara, Takafumi
    Beppu, Teruhiko
    Ueda, Kenji
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 : 3375 - 3383
  • [8] Microvenator marinus gen. nov., sp. nov., isolated from marine sediment, and description of Microvenatoraceae fam. nov. and Lujinxingiaceae fam. nov.
    Wang, Shuo
    Chen, Guan-Jun
    Du, Zong-Jun
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2022, 72 (05)
  • [9] Paracrocinitomix mangrovi gen. nov., sp. nov., isolated from a mangrove sediment: proposal of two new families, Phaeocystidibacteraceae fam. nov. and Owenweeksiaceae fam. nov., and emended description of the family Schleiferiaceae
    Huang, Zhaobin
    Huang, Yuanyuan
    Lai, Qiliang
    Oren, Aharon
    Wang, Wanpeng
    ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2023, 116 (02): : 171 - 184
  • [10] Paracrocinitomix mangrovi gen. nov., sp. nov., isolated from a mangrove sediment: proposal of two new families, Phaeocystidibacteraceae fam. nov. and Owenweeksiaceae fam. nov., and emended description of the family Schleiferiaceae
    Zhaobin Huang
    Yuanyuan Huang
    Qiliang Lai
    Aharon Oren
    Wanpeng Wang
    Antonie van Leeuwenhoek, 2023, 116 : 171 - 184