Seasonal and altitudinal changes of culturable bacterial and yeast diversity in Alpine forest soils

被引:40
|
作者
Franca, Luis [1 ]
Sannino, Ciro [2 ]
Turchetti, Benedetta [2 ]
Buzzini, Pietro [2 ]
Margesin, Rosa [1 ]
机构
[1] Univ Innsbruck, Inst Microbiol, Technikerstr 25, A-6020 Innsbruck, Austria
[2] Univ Perugia, Dept Agr Food & Environm Sci, Ind Yeasts Collect DBVPG, Borgo 20 Giugno 74, I-06121 Perugia, Italy
关键词
Psychrophiles; Culturable bacteria and yeasts; Alpine soils; 16S rRNA gene; 26S rRNA gene; ITS1&2; Bacterial OTUs; Yeast species; MICROBIAL COMMUNITY STRUCTURE; HETEROTROPHIC BACTERIA; PSYCHROPHILIC YEASTS; POLYPHASIC TAXONOMY; ENZYME-ACTIVITIES; SP-NOV; IDENTIFICATION; FUNGAL; ENVIRONMENTS; GRADIENT;
D O I
10.1007/s00792-016-0874-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The effect of altitude and season on abundance and diversity of the culturable heterotrophic bacterial and yeast community was examined at four forest sites in the Italian Alps along an altitude gradient (545-2000 m). Independently of altitude, bacteria isolated at 0 A degrees C (psychrophiles) were less numerous than those recovered at 20 A degrees C. In autumn, psychrophilic bacterial population increased with altitude. The 1194 bacterial strains were primarily affiliated with the classes Alpha-, Beta-, Gammaproteobacteria, Spingobacteriia and Flavobacteriia. Fifty-seven of 112 operational taxonomic units represented potential novel species. Strains isolated at 20 A degrees C had a higher diversity and showed similarities in taxa composition and abundance, regardless of altitude or season, while strains isolated at 0 A degrees C showed differences in community composition at lower and higher altitudes. In contrast to bacteria, yeast diversity was season-dependent: site- and altitude-specific effects on yeast diversity were only detected in spring. Isolation temperature affected the relative proportions of yeast genera. Isolations recovered 719 strains, belonging to the classes Dothideomycetes, Saccharomycetes, Tremellomycetes and Mycrobotryomycetes. The presence of few dominant bacterial OTUs and yeast species indicated a resilient microbial population that is not affected by season or altitude. Soil nutrient contents influenced significantly abundance and diversity of culturable bacteria, but not of culturable yeasts.
引用
收藏
页码:855 / 873
页数:19
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