The signature lncRNAs associated with the lung adenocarcinoma patients prognosis

被引:7
|
作者
Ding, Yong [1 ]
Liu, Jian-Hong [2 ]
机构
[1] Shaoxing Hosp Tradit Chinese Med, Dept Med Oncol, Shaoxing 312000, Peoples R China
[2] Zhejiang Jinhua Guangfu Hosp, Dept Respirat, Jinhua 321000, Zhejiang, Peoples R China
关键词
lncRNAs; lung adenocarcinoma; TCGA;
D O I
10.3934/mbe.2020083
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Long non-coding RNAs (lncRNAs) consist of over 200 nucleotides and are not translated into proteins. Previous studies have shown the importance of lncRNAs in the development of the lung adenocarcinoma (LUAD). Emergence of the high-throughput sequencing technology has led to the identification of a lot of lncRNAs which plays important roles in various biological events. Increasingly evidence has revealed that aberrant lncRNAs expression is related to the development of various cancers. We analyzed the RNA-seq data of 551 lung adenocarcinoma patients downloaded from The Cancer Genome Atlas (TCGA). By analyzing the pre-cancerous and cancer tissues of the relevant patient transcriptomes, we discovered the significant lncRNAs associated with the lung adenocarcinoma. Based on their median score, the prognosis of the patients was categorized as either poor or favorable. Univariate and multivariate COX analysis were used to further analyze the differential lncRNAs. Co-expression and gene enrichment analysis were performed to further investigate the function of the related lncRNA. RNA-seq data analysis led to the discovery of the lncRNA, OGFRP1 as an interesting factor involved in the lung adenocarcinoma. Therefore, lncRNAs play an important role in the clinical diagnosis and the treatment of the lung adenocarcinoma.
引用
收藏
页码:1593 / 1603
页数:11
相关论文
共 50 条
  • [1] Prognostic signature of lipid metabolism associated LncRNAs predict prognosis and treatment of lung adenocarcinoma
    Zhao, Jie
    Li, Guangjian
    Zhao, Guangqiang
    Wang, Wei
    Shen, Zhenghai
    Yang, Yantao
    Huang, Yunchao
    Ye, Lianhua
    FRONTIERS IN ONCOLOGY, 2022, 12
  • [2] A Robust Signature Based on Autophagy-Associated LncRNAs for Predicting Prognosis in Lung Adenocarcinoma
    Zhou, Mi
    Shao, Weihua
    Dai, Haiyun
    Zhu, Xin
    BIOMED RESEARCH INTERNATIONAL, 2020, 2020
  • [3] A predictive molecular signature consisting of lncRNAs associated with cellular senescence for the prognosis of lung adenocarcinoma
    Liu, Anbang
    Wang, Xiaohuai
    Hu, Liu
    Yan, Dongqing
    Yin, Yin
    Zheng, Hongjie
    Liu, Gengqiu
    Zhang, Junhang
    Li, Yun
    PLOS ONE, 2023, 18 (06):
  • [4] Four Low Expression LncRNAs are Associated with Prognosis of Human Lung Adenocarcinoma
    Shen, Xiu-Qing
    Wu, Qiu-Mei
    Yang, Cai-Hong
    Yan, Qin-Dan
    Cao, Peng-Ju
    Chen, Fa-Lin
    CLINICAL LABORATORY, 2020, 66 (10) : 2021 - 2032
  • [5] Molecular subgroup establishment and signature creation of lncRNAs associated with acetylation in lung adenocarcinoma
    Chen, Hao
    Wang, Yuanyong
    Shao, Changjian
    Guo, Kai
    Liu, Guanglin
    Wang, Zhaoyang
    Duan, Hongtao
    Pan, Minghong
    Ding, Peng
    Zhang, Yimeng
    Han, Jing
    Yan, Xiaolong
    AGING-US, 2024, 16 (02): : 1276 - 1297
  • [6] Characterization and Prognosis of Biological Microenvironment in Lung Adenocarcinoma through a Disulfidptosis-Related lncRNAs Signature
    Yang, Zhuo
    Cao, Shenglan
    Wang, Fangli
    Du, Kangming
    Hu, Fang
    GENETICS RESEARCH, 2023, 2023
  • [7] Establishment of a Gene Signature to Predict Prognosis for Patients with Lung Adenocarcinoma
    Li, Zhaodong
    Qi, Fangyuan
    Li, Fan
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (22) : 1 - 20
  • [8] Screening of important lncRNAs associated with the prognosis of lung adenocarcinoma, based on integrated bioinformatics analysis
    Li, Jianliang
    Yu, Xiaoping
    Liu, Qian
    Ou, Shuangyan
    Li, Ke
    Kong, Yi
    Liu, Hanchun
    Ouyang, Yongzhong
    Xu, Ruocai
    MOLECULAR MEDICINE REPORTS, 2019, 19 (05) : 4067 - 4080
  • [9] Metabolism-related lncRNAs signature to predict the prognosis of colon adenocarcinoma
    Sun, Yimin
    Liu, Bingyan
    Xiao, BaoLai
    Jiang, XueFeng
    Xiang, Jin-Jian
    Xie, Jianping
    Hu, Xiao-Miao
    CANCER MEDICINE, 2023, 12 (05): : 5994 - 6008
  • [10] Angiogenesis-related lncRNAs predict the prognosis signature of stomach adenocarcinoma
    Chen Han
    Cong Zhang
    Huixia Wang
    Kexin Li
    Lianmei Zhao
    BMC Cancer, 21