Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal

被引:28
|
作者
Buechner, Philipp [1 ]
Hinderer, Marc [1 ]
Unberath, Philipp [1 ]
Metzger, Patrick [2 ,3 ,4 ]
Boeker, Martin [5 ,6 ]
Acker, Till [7 ]
Haller, Florian [8 ]
Mack, Elisabeth [9 ,10 ]
Nowak, Daniel [11 ,12 ]
Paret, Claudia [13 ,14 ]
Schanze, Denny [15 ]
von Bubno, Nikolas [16 ,17 ,18 ]
Wagner, Sebastian [19 ]
Busch, Hauke [20 ,21 ]
Boerries, Melanie [2 ,3 ,22 ,23 ,24 ,25 ]
Christoph, Jan [1 ]
机构
[1] Friedrich Alexander Univ Erlangen Nurnberg FAU, Dept Med Informat, D-91058 Erlangen, Germany
[2] Univ Freiburg, Fac Med, Inst Med Bioinformat & Syst Med, D-79110 Freiburg, Germany
[3] Univ Freiburg, Med Ctr, D-79110 Freiburg, Germany
[4] Univ Freiburg, Fac Biol, D-79104 Freiburg, Germany
[5] Univ Freiburg, Fac Med, Inst Med Biometry & Stat, D-79104 Freiburg, Germany
[6] Univ Freiburg, Med Ctr, D-79104 Freiburg, Germany
[7] Justus Liebig Univ Giessen, Inst Neuropathol, D-35392 Giessen, Germany
[8] Univ Hosp Erlangen, Inst Pathol, D-91054 Erlangen, Germany
[9] Philipps Univ Marburg, Dept Hematol Oncol & Immunol, Baldingerstr, D-35043 Marburg, Germany
[10] Univ Hosp Giessen & Marburg, Baldingerstr, D-35043 Marburg, Germany
[11] Heidelberg Univ, Med Fac Mannheim, Dept Hematol & Oncol, D-68167 Mannheim, Germany
[12] Heidelberg Univ, Med Fac Mannheim, Heinrich Lanz Ctr Digital Hlth, D-68167 Mannheim, Germany
[13] Johannes Gutenberg Univ Mainz, Univ Med Ctr, Childrens Hosp, Pediat Hematol Oncol, D-55131 Mainz, Germany
[14] Johannes Gutenberg Univ Mainz, Univ Med Ctr, Univ Canc Ctr UCT, D-55131 Mainz, Germany
[15] Otto Von Guericke Univ, Fac Med, Univ Hosp Magdeburg, Inst Human Genet, D-39120 Magdeburg, Germany
[16] Univ Schleswig Holstein, Dept Hematol & Oncol, Med Ctr, Campus Lubeck, D-23538 Lubeck, Germany
[17] German Canc Consortium DKTK, Partner Site Freiburg, D-79106 Freiburg, Germany
[18] Univ Freiburg, Med Ctr, Fac Med, Dept Hematol Oncol & Stem Cell Transplantat, D-79106 Freiburg, Germany
[19] Goethe Univ Hosp, Dept Med 2, Hematol Oncol, D-60590 Frankfurt, Germany
[20] Univ Lubeck, Inst Expt Dermatol, D-23562 Lubeck, Germany
[21] Univ Lubeck, Inst Cardiogenet, D-23562 Lubeck, Germany
[22] Univ Freiburg, Fac Med, CCCF, D-79106 Freiburg, Germany
[23] Univ Freiburg, Med Ctr, D-79106 Freiburg, Germany
[24] German Canc Consortium DKTK, Partner Site Freiburg, D-69120 Heidelberg, Germany
[25] German Canc Res Ctr, D-69120 Heidelberg, Germany
关键词
decision making; computer-assisted; decision support systems; clinical; precision medicine; computational biology; molecular tumor board; cBioPortal; requirements analysis; neoplasms; EXPERIENCE; GENOMICS;
D O I
10.3390/diagnostics10020093
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Clinicians in molecular tumor boards (MTB) are confronted with a growing amount of genetic high-throughput sequencing data. Today, at German university hospitals, these data are usually handled in complex spreadsheets from which clinicians have to obtain the necessary information. The aim of this work was to gather a comprehensive list of requirements to be met by cBioPortal to support processes in MTBs according to clinical needs. Therefore, oncology experts at nine German university hospitals were surveyed in two rounds of interviews. To generate an interview guideline a scoping review was conducted. For visual support in the second round, screenshot mockups illustrating the requirements from the first round were created. Requirements that cBioPortal already meets were skipped during the second round. In the end, 24 requirements with sometimes several conceivable options were identified and 54 screenshot mockups were created. Some of the identified requirements have already been suggested to the community by other users or are currently being implemented in cBioPortal. This shows, that the results are in line with the needs expressed by various disciplines. According to our findings, cBioPortal has the potential to significantly improve the processes and analyses of an MTB after the implementation of the identified requirements.
引用
收藏
页数:15
相关论文
共 50 条
  • [1] Clinical actionability of BRCA2 alterations in uterine leiomyosarcoma: a molecular tumor board case report and a cBioPortal comprehensive analysis
    Bielo, Luca Boscolo
    Repetto, Matteo
    Crimini, Edoardo
    Belli, Carmen
    Setola, Elisabetta
    Parma, Gabriella
    Fusco, Nicola
    Barberis, Massimo
    Rocco, Elena Guerini
    Marra, Antonio
    Colombo, Nicoletta
    Curigliano, Giuseppe
    ONCOLOGIST, 2024, 29 (07): : 560 - 565
  • [2] cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board
    Ustjanzew, Arsenij
    Desuki, Alexander
    Ritzel, Christoph
    Dolezilek, Alina Corinna
    Wagner, Daniel-Christoph
    Christoph, Jan
    Unberath, Philipp
    Kindler, Thomas
    Faber, Jorg
    Marini, Federico
    Panholzer, Torsten
    Paret, Claudia
    BMC MEDICAL INFORMATICS AND DECISION MAKING, 2021, 21 (01)
  • [3] cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board
    Arsenij Ustjanzew
    Alexander Desuki
    Christoph Ritzel
    Alina Corinna Dolezilek
    Daniel-Christoph Wagner
    Jan Christoph
    Philipp Unberath
    Thomas Kindler
    Jörg Faber
    Federico Marini
    Torsten Panholzer
    Claudia Paret
    BMC Medical Informatics and Decision Making, 21
  • [4] A platform for web augmentation requirements specification
    Firmenich, Diego
    Firmenich, Sergio
    Rivero, José MatíAs
    Antonelli, Leandro
    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2014, 8541
  • [5] A platform for web augmentation requirements specification
    Firmenich, Diego (dfirmenich@tw.unp.edu.ar), 1600, Springer Verlag (8541):
  • [6] A Platform for Web Augmentation Requirements Specification
    Firmenich, Diego
    Firmenich, Sergio
    Matias Rivero, Jose
    Antonelli, Leandro
    WEB ENGINEERING, ICWE 2014, 2014, 8541 : 1 - 20
  • [8] The molecular tumor board
    Missios, Pavlos
    Beha, Janina
    Bitzer, Michael
    Malek, Nisar P.
    CHIRURG, 2021, 92 (11): : 1011 - 1015
  • [9] The molecular tumor board
    Konukiewitz, Bjoern
    Kellers, Franziska
    Nettersheim, Alexander
    Pfarr, Nicole
    Kirfel, Jutta
    ONKOLOGIE, 2024, 30 (10): : 916 - 921
  • [10] The molecular tumor board
    Missios, Pavlos
    Beha, Janina
    Bitzer, Michael
    Malek, Nisar P.
    ONKOLOGE, 2020, 26 (08): : 679 - 684