Evolutionary studies of ligand binding sites in proteins

被引:19
|
作者
Najmanovich, Rafael J. [1 ]
机构
[1] Univ Montreal, Fac Med, Dept Pharmacol & Physiol, Montreal, PQ H3T 1J4, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
BIOCHEMICAL FUNCTION; ORGANIC COFACTORS; FOLD SPACE; DATA-BANK; POCKETS; SEQUENCE; SIMILARITIES; DOCKING; IDENTIFICATION; MECHANISMS;
D O I
10.1016/j.sbi.2016.11.024
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Biological processes at their most fundamental molecular aspects are defined by molecular interactions with ligand protein interactions in particular at the core of cellular functions such as metabolism and signalling. Divergent and convergent processes shape the evolution of ligand binding sites. The competition between similar ligands and binding sites across protein families create evolutionary pressures that affect the specificity and selectivity of interactions. This short review showcases recent studies of the evolution of ligand binding sites and methods used to detect binding-site similarities.
引用
收藏
页码:85 / 90
页数:6
相关论文
共 50 条
  • [1] Sequence variation in ligand binding sites in proteins
    Thomas J Magliery
    Lynne Regan
    BMC Bioinformatics, 6
  • [2] Sequence variation in ligand binding sites in proteins
    Magliery, TJ
    Regan, L
    BMC BIOINFORMATICS, 2005, 6 (1)
  • [3] STUDIES ON BINDING SITES OF MYELOMA PROTEINS
    GROSSBERG, AL
    JOURNAL OF IMMUNOLOGY, 1971, 107 (03): : 924 - +
  • [4] Automated prediction of ligand-binding sites in proteins
    Harris, Rodney
    Olson, Arthur J.
    Goodsell, David S.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 70 (04) : 1506 - 1517
  • [5] Ligand-induced changes in the binding sites of proteins
    Fradera, X
    de la Cruz, X
    Silva, CHTP
    Gelpí, JL
    Luque, FJ
    Orozco, M
    BIOINFORMATICS, 2002, 18 (07) : 939 - 948
  • [6] Identification of the ligand binding sites on the molecular surface of proteins
    Kinoshita, K
    Nakamura, H
    PROTEIN SCIENCE, 2005, 14 (03) : 711 - 718
  • [7] Evolutionary Conservation of Phospholipid-Binding Sites in Membrane Proteins
    Adamian, Larisa A.
    Liang, Jie
    BIOPHYSICAL JOURNAL, 2010, 98 (03) : 49A - 49A
  • [8] Identification of ligand binding sites in intrinsically disordered proteins with a differential binding score
    Qiao-Hong Chen
    V. V. Krishnan
    Scientific Reports, 11
  • [9] Identification of ligand binding sites in intrinsically disordered proteins with a differential binding score
    Chen, Qiao-Hong
    Krishnan, V. V.
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [10] COMP 224-Binding response: A method for the prediction of ligand binding sites on proteins
    Zhong, Shijun
    MacKerell, Alexander D., Jr.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2008, 235