Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research

被引:7
|
作者
Chou, Austin [1 ,2 ]
Torres-Espin, Abel [1 ,2 ]
Huie, J. Russell [1 ,2 ,7 ]
Krukowski, Karen [1 ,3 ]
Lee, Sangmi [1 ,2 ]
Nolan, Amber [1 ,3 ]
Guglielmetti, Caroline [3 ,6 ]
Hawkins, Bridget E. [8 ,9 ]
Chaumeil, Myriam M. [3 ,6 ]
Manley, Geoffrey T. [1 ,2 ]
Beattie, Michael S. [1 ,2 ,4 ,7 ]
Bresnahan, Jacqueline C. [1 ,2 ,4 ]
Martone, Maryann E. [10 ]
Grethe, Jeffrey S. [10 ]
Rosi, Susanna [1 ,2 ,3 ,4 ,5 ]
Ferguson, Adam R. [1 ,2 ,4 ,7 ]
机构
[1] Univ Calif San Francisco, Brain & Spinal Injury Ctr, San Francisco, CA USA
[2] Univ Calif San Francisco, Dept Neurol Surg, San Francisco, CA USA
[3] Univ Calif San Francisco, Dept Phys Therapy & Rehabil Sci, San Francisco, CA USA
[4] Univ Calif San Francisco, Weill Inst Neurosci, San Francisco, CA USA
[5] Univ Calif San Francisco, Kavli Inst Fundamental Neurosci, San Francisco, CA USA
[6] Univ Calif San Francisco, Dept Radiol & Biomed Imaging, San Francisco, CA USA
[7] San Francisco Vet Affairs Healthcare Syst, San Francisco, CA USA
[8] Univ Texas Med Branch Galveston, Dept Anesthesiol, Galveston, TX USA
[9] Univ Texas Med Branch Galveston, Moody Project Traumat Brain Injury Res, Galveston, TX USA
[10] Univ Calif San Diego, Dept Neurosci, San Diego, CA USA
来源
NEUROTRAUMA REPORTS | 2022年 / 3卷 / 01期
关键词
data sharing; FAIR principles; multi-variate analysis; Open Data Commons; principal component analysis; traumatic brain Injury; DATA ELEMENTS; BIG-DATA; DEFICITS; MULTICENTER; INHIBITION; IMPUTATION; OUTCOMES; MODELS; TBI;
D O I
10.1089/neur.2021.0061
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI (ODC-TBI) is a community-centered repository emphasizing Findable, Accessible, Interoperable, and Reusable data sharing and publication with persistent identifiers. Importantly, the ODC-TBI implements data sharing of individual subject data, enabling pooling for high-sample-size, feature-rich data sets for machine learning analytics. We demonstrate pooled ODC-TBI data analyses, starting with descriptive analytics of subject-level data from 11 previously published articles (N = 1250 subjects) representing six distinct pre-clinical TBI models. Second, we perform unsupervised machine learning on multi-cohort data to identify persistent inflammatory patterns across different studies, improving experimental sensitivity for pro- versus anti-inflammation effects. As funders and journals increasingly mandate open data practices, ODC-TBI will create new scientific opportunities for researchers and facilitate multi-data-set, multi-dimensional analytics toward effective translation.
引用
收藏
页码:139 / 157
页数:19
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