Web-Based Open-Source Tool for Isotachophoresis

被引:9
|
作者
Avaro, Alexandre S. [1 ]
Sun, Yixiao [1 ]
Jiang, Kaiying [1 ]
Bahga, Supreet S. [2 ]
Santiago, Juan G. [1 ]
机构
[1] Stanford Univ, Dept Mech Engn, Stanford, CA 94305 USA
[2] IIT Delhi Hauz Khas, Dept Mech Engn, New Delhi 110016, India
关键词
CONCENTRATION CASCADE; LEADING ELECTROLYTE; COMPUTER-SIMULATION; ELECTROPHORESIS; ACCURACY; DYNAMICS; MOBILITY;
D O I
10.1021/acs.analchem.1c03925
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
We present the development of a client-side web-based simulator for complex electrophoresis phenomena, including isotachophoresis. The simulation tool is called Client-based Application for Fast Electrophoresis Simulation (CAFES). CAFES uses the broad cross-browser compatibility of JavaScript to provide a rapid and easy-to-use tool for coupled unsteady electromigration, diffusion, and equilibrium electrolyte reactions among multiple weak electrolytes. The code uses a stationary grid (for simplicity) and an adaptive time step to provide reliable estimates of ion concentration dynamics (including pH profile evolution), requiring no prior installation nor compilation. CAFES also offers a large database of commonly used species and their relevant physicochemical properties. We present a validation of predictions from CAFES by comparing them to experimental data of peak- and plateau-mode isotachophoresis experiments. The code yields accurate estimates of interface velocity, plateau length and relative intensity, and pH variations while significantly reducing the computation time compared to existing codes. The tool is open-source and available for free at httos://microthadics.startiord.edu/cafes.
引用
收藏
页码:15768 / 15774
页数:7
相关论文
共 50 条
  • [1] Annotation Web - An open-source web-based annotation tool for ultrasound images
    Smistad, Erik
    Ostvik, Andreas
    Lovstakken, Lasse
    [J]. INTERNATIONAL ULTRASONICS SYMPOSIUM (IEEE IUS 2021), 2021,
  • [2] A Web-based Open-source Geoinformation Tool for Regional Water Resources Assessment
    Grasso, Susanna
    Claps, Pierluigi
    Ganora, Daniele
    Libertino, Andrea
    [J]. WATER RESOURCES MANAGEMENT, 2021, 35 (02) : 675 - 687
  • [3] A web-based, open-source database for the distribution of hyperspectral signatures
    Ferwerda, J. G.
    Jones, S. D.
    Du Pei-Jun
    [J]. GEOINFORMATICS 2006: GEOSPATIAL INFORMATION TECHNOLOGY, 2006, 6421
  • [4] Eve: a Novel Open-source Web-based Agent Platform
    de Jong, Jos
    Stellingwerff, Ludo
    Pazienza, Giovanni E.
    [J]. 2013 IEEE INTERNATIONAL CONFERENCE ON SYSTEMS, MAN, AND CYBERNETICS (SMC 2013), 2013, : 1537 - 1541
  • [5] Open-Source, Web-Based Dashboard Components for DICOM Connectivity
    Catalina Bustamante
    Julian Pineda
    Simon Rascovsky
    Andres Arango
    [J]. Journal of Digital Imaging, 2016, 29 : 455 - 459
  • [6] Open-Source, Web-Based Dashboard Components for DICOM Connectivity
    Bustamante, Catalina
    Pineda, Julian
    Rascovsky, Simon
    Arango, Andres
    [J]. JOURNAL OF DIGITAL IMAGING, 2016, 29 (04) : 455 - 459
  • [7] Establishing a Web-based DICOM teaching file authoring tool using open-source public software
    Lee, WJ
    Yang, CY
    Liu, KL
    Liu, HM
    Ching, YT
    Chen, SJ
    [J]. JOURNAL OF DIGITAL IMAGING, 2005, 18 (03) : 169 - 175
  • [8] Establishing a Web-Based DICOM Teaching File Authoring Tool Using Open-Source Public Software
    Wen-Jeng Lee
    Chung-Yi Yang
    Kao-Lang Liu
    Hon-Man Liu
    Yu-Tai Ching
    Shyh-Jye Chen
    [J]. Journal of Digital Imaging, 2005, 18 : 169 - 175
  • [9] AN OPEN-SOURCE WEB-BASED ANALYTICS PLATFORM FOR THE HUMAN IMMUNE ATLAS
    Wasser, Martin
    Yeo, Joo Guan
    Kumar, Pavanish
    Arkachaisri, Thaschawee
    Poh, Su Li
    Ally, Fauziah
    Leong, Jing Yao
    Yeo, Kee Thai
    Albani, Salvatore
    [J]. ANNALS OF THE RHEUMATIC DISEASES, 2019, 78 : 2131 - 2131
  • [10] Navigation Support in Evolving Open-Source Communities by a Web-Based Dashboard
    Hannemann, Anna
    Liiva, Kristjan
    Klamma, Ralf
    [J]. OPEN SOURCE SOFTWARE: MOBILE OPEN SOURCE TECHNOLOGIES, 2014, 427 : 11 - 20