VisBOL: Web-Based Tools for Synthetic Biology Design Visualization

被引：15
|
作者：
McLaughlin, James Alastair [1 ]
Pocock, Matthew [2 ]
Misirli, Goksel [1 ]
Madsen, Curtis [1 ]
Wipat, Anil [1 ]
机构：
[1] Newcastle Univ, Sch Comp Sci, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England
[2] Turing Ate My Hamster Ltd, Newcastle Upon Tyne NE27 0RT, Tyne & Wear, England
来源：
ACS SYNTHETIC BIOLOGY | 2016年 / 5卷 / 08期
基金：
英国工程与自然科学研究理事会;
关键词：
synthetic biology; visualization; Synthetic Biology Open Language; genetic circuits; SBOL Visual;
D O I：
10.1021/acssynbio.5b00244
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
VisBOL is a Web-based application that allows the rendering of genetic circuit designs, enabling synthetic biologists to visually convey designs in SBOL visual format. VisBOL designs can be exported to formats including PNG and SVG images to be embedded in Web pages, presentations and publications. The VisBOL tool enables the automated generation of visualizations from designs specified using the Synthetic Biology Open Language (SBOL) version 2.0, as well as a range of well-known bioinformatics formats including GenBank and Pigeoncad notation. VisBOL is provided both as a user accessible Web site and as an open-source (BSD) JavaScript library that can be used to embed diagrams within other content and software.
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页码：874 / 876
页数：3
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