Peak fitting in 2D 1H-13C HSQC NMR spectra for metabolomic studies

被引:9
|
作者
McKenzie, James S. [2 ,3 ]
Charlton, Adrian J. [2 ]
Donarski, James A. [2 ]
MacNicoll, Alan D. [2 ]
Wilson, Julie C. [1 ,3 ]
机构
[1] Univ York, Dept Math, York YO10 5DD, N Yorkshire, England
[2] Food & Environm Res Agcy, York YO41 1LZ, N Yorkshire, England
[3] Univ York, Dept Chem, York YO10 5DD, N Yorkshire, England
关键词
2D H-1-C-13 HSQC NMR; Peak modelling; Lorentzian; Metabolomics; Classification; Metabolites; MAGNETIC-RESONANCE-SPECTROSCOPY; H-1-NMR SPECTROSCOPY; ARABIDOPSIS-THALIANA; PRINCIPAL-COMPONENTS; COMPLEX; SPECTROMETRY; METABOLITES; URINE; IDENTIFICATION; ENHANCEMENT;
D O I
10.1007/s11306-010-0226-7
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
A modified Lorentzian distribution function is used to model peaks in two-dimensional (2D) H-1-C-13 heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectra. The model fit is used to determine accurate chemical shifts from genuine signals in complex metabolite mixtures such as blood. The algorithm can be used to extract features from a set of spectra from different samples for exploratory metabolomics. First a reference spectrum is created in which the peak intensities are given by the median value over all samples at each point in the 2D spectra so that H-1-C-13 correlations in any spectra are accounted for. The mathematical model provides a footprint for each peak in the reference spectrum, which can be used to bin the H-1-C-13 correlations in each HSQC spectrum. The binned intensities are then used as variables in multivariate analyses and those found to be discriminatory are rapidly identified by cross referencing the chemical shifts of the bins with a database of C-13 and H-1 chemical shift correlations from known metabolites.
引用
收藏
页码:574 / 582
页数:9
相关论文
共 50 条
  • [1] Peak fitting in 2D 1H–13C HSQC NMR spectra for metabolomic studies
    James S. McKenzie
    Adrian J. Charlton
    James A. Donarski
    Alan D. MacNicoll
    Julie C. Wilson
    Metabolomics, 2010, 6 : 574 - 582
  • [2] Removal of t1 noise from metabolomic 2D 1H-13C HSQC NMR spectra by Correlated Trace Denoising
    Poulding, Simon
    Charlton, Adrian J.
    Donarski, James
    Wilson, Julie C.
    JOURNAL OF MAGNETIC RESONANCE, 2007, 189 (02) : 190 - 199
  • [3] Identification of metabolites from 2D 1H-13C HSQC NMR using peak correlation plots
    Oman, Tommy
    Tessem, May-Britt
    Bathen, Tone F.
    Bertilsson, Helena
    Angelsen, Anders
    Hedenstrom, Mattias
    Andreassen, Trygve
    BMC BIOINFORMATICS, 2014, 15
  • [4] Identification of metabolites from 2D 1H-13C HSQC NMR using peak correlation plots
    Tommy Öman
    May-Britt Tessem
    Tone F Bathen
    Helena Bertilsson
    Anders Angelsen
    Mattias Hedenström
    Trygve Andreassen
    BMC Bioinformatics, 15
  • [5] Automated structure verification based on a combination of 1D 1H NMR and 2D 1H-13C HSQC spectra
    Golotvin, Sergey S.
    Vodopianov, Eugene
    Pol, Rostislav
    Lefebvre, Brent A.
    Williams, Antony J.
    Rutkowske, Randy D.
    Spitzer, Timothy D.
    MAGNETIC RESONANCE IN CHEMISTRY, 2007, 45 (10) : 803 - 813
  • [6] NMR profiling of biomolecules at natural abundance using 2D 1H-15N and 1H-13C multiplicity-separated (MS) HSQC spectra
    Chen, Kang
    Freedberg, Daron I.
    Keire, David A.
    JOURNAL OF MAGNETIC RESONANCE, 2015, 251 : 65 - 70
  • [7] Use of the 2D 1H-13C HSQC NMR Methyl Region to Evaluate the Higher Order Structural Integrity of Biopharmaceuticals
    Hwang, Tsang-Lin
    Batabyal, Dipanwita
    Knutson, Nicholas
    Wikstrom, Mats
    MOLECULES, 2021, 26 (09):
  • [8] Evaluation of Non-Uniform Sampling 2D 1H-13C HSQC Spectra for Semi-Quantitative Metabolomics
    Zhang, Bo
    Powers, Robert
    O'Day, Elizabeth M.
    METABOLITES, 2020, 10 (05)
  • [9] GIPMA: Global Intensity-Guided Peak Matching and Alignment for 2D 1H-13C HSQC-Based Metabolomics
    Du, Huan
    Gu, Xiu
    Chen, Jialuo
    Bai, Caihong
    Duan, Xiaohui
    Hu, Kaifeng
    ANALYTICAL CHEMISTRY, 2023, 95 (06) : 3195 - 3203
  • [10] MetaboQuant: a tool combining individual peak calibration and outlier detection for accurate metabolite quantification in 1D 1H and 1H-13C HSQC NMR spectra
    Klein, Matthias S.
    Oefner, Peter J.
    Gronwald, Wolfram
    BIOTECHNIQUES, 2013, 54 (05) : 251 - +