Effect of non-synonymous SNP on JAK1 protein structure and subsequent function

被引:1
|
作者
Liza, Rozario [1 ]
Tanima, Sharker [1 ]
Tahsin, Nairuz [1 ]
Reaz, Morshed Md. [1 ]
机构
[1] Noakhali Sci & Technol Univ, Dept Biochem & Mol Biol, Noakhali 3814, Bangladesh
关键词
JAK1; gene; non synonymous SNP; structure prediction; altered function; MUTATIONS; DISEASE;
D O I
10.6026/97320630015723
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
JAK1 gene plays a critical role in signalling. Malfunction of JAK1 is linked to numerous human diseases ranging from chronic inflammation to cancers and autoimmune diseases. Genetic variations in JAKI exhibit deleterious effects on gene function leading to the deregulation of signalling pathways. A comprehensive list of nsSNPs potentially affecting the structure and function of JAK1 gene is not available. We report 3 deleterious nsSNPs (F78L, Q644R and S646F) in the coding region of JAK1 with predicted structure and function linking to diseases. However, further studies are needed to validate this preliminary observation.
引用
下载
收藏
页码:723 / 728
页数:6
相关论文
共 50 条
  • [1] The deleterious impact of a non-synonymous SNP on protein structure and function is apparent in hypertension
    Sharma, Kavita
    Hema, Kanipakam
    Bhatraju, Naveen Kumar
    Kukreti, Ritushree
    Das, Rajat Subhra
    Gupta, Mohit Dayal
    Syed, Mansoor Ali
    Pasha, M. A. Qadar
    JOURNAL OF MOLECULAR MODELING, 2022, 28 (01)
  • [2] The deleterious impact of a non-synonymous SNP on protein structure and function is apparent in hypertension
    Kavita Sharma
    Kanipakam Hema
    Naveen Kumar Bhatraju
    Ritushree Kukreti
    Rajat Subhra Das
    Mohit Dayal Gupta
    Mansoor Ali Syed
    M. A. Qadar Pasha
    Journal of Molecular Modeling, 2022, 28
  • [3] SNAP: predict effect of non-synonymous polymorphisms on function
    Bromberg, Yana
    Rost, Burkhard
    NUCLEIC ACIDS RESEARCH, 2007, 35 (11) : 3823 - 3835
  • [4] Impact of non-synonymous mutations on the structure and function of telomeric repeat binding factor 1
    Habiba, Insan
    Khanb, Shama
    Mohammadc, Taj
    Hussaind, Afzal
    Alajmid, Mohamed F.
    Rehmand, Tabish
    Anjume, Farah
    Hassanc, Md. Imtaiyaz
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (19): : 9053 - 9066
  • [5] Identification of Genic SNPs from ESTs and Effect of Non-synonymous SNP on Proteins in Pigeonpea
    Wankhede D.P.
    Aravind J.
    Mishra S.P.
    Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 2019, 89 (2) : 595 - 603
  • [6] Impact of highly deleterious non-synonymous polymorphisms on GRIN2A protein's structure and function
    Ahammad, Ishtiaque
    Jamal, Tabassum Binte
    Bhattacharjee, Arittra
    Chowdhury, Zeshan Mahmud
    Rahman, Suparna
    Hassan, Md Rakibul
    Hossain, Mohammad Uzzal
    Das, Keshob Chandra
    Keya, Chaman Ara
    Salimullah, Md
    PLOS ONE, 2023, 18 (06):
  • [7] Non-Synonymous SNP in the ApoR Gene Associated with Pork Meat Quality
    Lee, Yong Hwa
    Cho, Eun Seok
    Kwon, Eun Jung
    Kim, Byeong-Woo
    Park, Da Hye
    Park, Hwa Chun
    Park, Beom Young
    Nam, Juhyun
    Jang, Ik Soon
    Choi, Jong-Soon
    Bang, Woo Young
    Kim, Chul Wook
    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 2011, 75 (10) : 2018 - 2020
  • [8] SNP arrays facilitite genotyping of non-synonymous SNP in MDS to identify disease susceptibility loci
    Jankowska, Anna M.
    Przychodzen, Bartlomiej P.
    Gondek, Lukasz P.
    Maciejewski, Jaroslaw P.
    BLOOD, 2007, 110 (11) : 714A - 714A
  • [9] LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures
    Ryan, Michael
    Diekhans, Mark
    Lien, Stephanie
    Liu, Yun
    Karchin, Rachel
    BIOINFORMATICS, 2009, 25 (11) : 1431 - 1432
  • [10] A comprehensive in silico analysis of multiple sclerosis related non-synonymous SNPs and their potential effects on protein structure and function
    Erkal, Burcin
    Akcesme, Betuel
    coban, Arzu
    Korkut, Senay Vural
    MULTIPLE SCLEROSIS AND RELATED DISORDERS, 2022, 68