What Is a "Unimodal" Cell Population? Using Statistical Tests as Criteria for Unimodality in Automated Gating and Quality Control

被引:6
|
作者
Johnsson, Kerstin [1 ]
Linderoth, Magnus [2 ]
Fontes, Magnus [1 ,3 ]
机构
[1] Lund Univ, Ctr Math Sci, Box 118, S-22100 Lund, Sweden
[2] Lund Univ, Dept Automat Control, Lund, Sweden
[3] Inst Pasteur, Int Grp Data Anal, Paris, France
关键词
flow cytometry; automated gating; quality control; data analysis; unimodality; dip test; bandwidth test; calibration; FLOW-CYTOMETRY DATA; EXCESS MASS; IDENTIFICATION; COMPENSATION;
D O I
10.1002/cyto.a.23173
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Many automated gating algorithms for flow cytometry data are based on the concept of unimodal cell populations. However, in this article, we show that criteria previously used to make decisions on unimodality cannot adequately distinguish unimodal from bimodal densities. We show that dip and bandwidth tests for unimodality, taken from the statistics literature, can do this with consistent and low error rates. These tests also have the possibility to adjust the significance level to handle the trade-off between failing to detect a second mode and seeing a second mode when there is none. The differences between the dip and bandwidth tests are elucidated using real data from the FlowCAP I challenge, also guidelines for flow cytometry data preprocessing are given. (C) 2017 International Society for Advancement of Cytometry
引用
收藏
页码:908 / 916
页数:9
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