Multi-site harmonization of 7 tesla MRI neuroimaging protocols

被引:31
|
作者
Clarke, William T. [1 ]
Mougin, Olivier [2 ]
Driver, Ian D. [3 ]
Rua, Catarina [4 ]
Morgan, Andrew T. [5 ]
Asghar, Michael [2 ]
Clare, Stuart [1 ]
Francis, Susan [2 ]
Wise, Richard G. [3 ]
Rodgers, Christopher T. [4 ]
Carpenter, Adrian [4 ]
Muir, Keith [5 ]
Bowtell, Richard [2 ]
机构
[1] Univ Oxford, Nuffield Dept Clin Neurosci, FMRIB, Wellcome Ctr Integrat Neuroimaging, Oxford, England
[2] Univ Nottingham, Sch Phys & Astron, Sir Peter Mansfield Imaging Ctr, Nottingham, England
[3] Cardiff Univ, Sch Psychol, Brain Res Imaging Ctr, Cardiff, Wales
[4] Univ Cambridge, Dept Clin Neurosci, Wolfson Brain Imaging Ctr, Cambridge, England
[5] Univ Glasgow, Imaging Ctr Excellence, Glasgow, Lanark, Scotland
基金
英国惠康基金; 英国医学研究理事会;
关键词
7; tesla; MRI; Harmonization; Anatomical; Functional; Scanner calibration; VISUAL ENVIRONMENT; HUMAN BRAIN; ROBUST; PULSE; INVERSION; CORTEX;
D O I
10.1016/j.neuroimage.2019.116335
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Increasing numbers of 7 T (7 T) magnetic resonance imaging (MRI) scanners are in research and clinical use. 7 T MRI can increase the scanning speed, spatial resolution and contrast-to-noise-ratio of many neuroimaging protocols, but technical challenges in implementation have been addressed in a variety of ways across sites. In order to facilitate multi-centre studies and ensure consistency of findings across sites, it is desirable that 7 T MRI sites implement common high-quality neuroimaging protocols that can accommodate different scanner models and software versions. With the installation of several new 7 T MRI scanners in the United Kingdom, the UK7T Network was established with an aim to create a set of harmonized structural and functional neuroimaging sequences and protocols. The Network currently includes five sites, which use three different scanner platforms, provided by two different vendors. Here we describe the harmonization of functional and anatomical imaging protocols across the three different scanner models, detailing the necessary changes to pulse sequences and reconstruction methods. The harmonized sequences are fully described, along with implementation details. Example datasets acquired from the same subject on all Network scanners are made available. Based on these data, an evaluation of the harmonization is provided. In addition, the implementation and validation of a common system calibration process is described.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Multi-site harmonization of diffusion MRI data in a registration framework
    Mirzaalian, Hengameh
    Ning, Lipeng
    Savadjiev, Peter
    Pasternak, Ofer
    Bouix, Sylvain
    Michailovich, Oleg
    Karmacharya, Sarina
    Grant, Gerald
    Marx, Christine E.
    Morey, Rajendra A.
    Flashman, Laura A.
    George, Mark S.
    McAllister, Thomas W.
    Andaluz, Norberto
    Shutter, Lori
    Coimbra, Raul
    Zafonte, Ross D.
    Coleman, Mike J.
    Kubicki, Marek
    Westin, Carl-Fredrik
    Stein, Murray B.
    Shenton, Martha E.
    Rathi, Yogesh
    BRAIN IMAGING AND BEHAVIOR, 2018, 12 (01) : 284 - 295
  • [2] Multi-site harmonization of diffusion MRI data in a registration framework
    Hengameh Mirzaalian
    Lipeng Ning
    Peter Savadjiev
    Ofer Pasternak
    Sylvain Bouix
    Oleg Michailovich
    Sarina Karmacharya
    Gerald Grant
    Christine E. Marx
    Rajendra A. Morey
    Laura A. Flashman
    Mark S. George
    Thomas W. McAllister
    Norberto Andaluz
    Lori Shutter
    Raul Coimbra
    Ross D. Zafonte
    Mike J. Coleman
    Marek Kubicki
    Carl-Fredrik Westin
    Murray B. Stein
    Martha E. Shenton
    Yogesh Rathi
    Brain Imaging and Behavior, 2018, 12 : 284 - 295
  • [3] Multi-Site Harmonization of Diffusion MRI Data via Method of Moments
    Huyn, Khoi Minh
    Chen, Geng
    Wu, Ye
    Shen, Dinggang
    Yap, Pew-Thian
    IEEE TRANSACTIONS ON MEDICAL IMAGING, 2019, 38 (07) : 1599 - 1609
  • [4] Style Transfer Using Generative Adversarial Networks for Multi-site MRI Harmonization
    Liu, Mengting
    Maiti, Piyush
    Thomopoulos, Sophia
    Zhu, Alyssa
    Chai, Yaqiong
    Kim, Hosung
    Jahanshad, Neda
    MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2021, PT III, 2021, 12903 : 313 - 322
  • [5] Harmonization of multi-site MRS data with ComBat
    Bell, Tiffany K.
    Godfrey, Kate J.
    Ware, Ashley L.
    Yeates, Keith Owen
    Harris, Ashley D.
    NEUROIMAGE, 2022, 257
  • [6] Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters
    Karayumak, Suheyla Cetin
    Bouix, Sylvain
    Ning, Lipeng
    James, Anthony
    Crow, Tim
    Shenton, Martha
    Kubicki, Marek
    Rathi, Yogesh
    NEUROIMAGE, 2019, 184 : 180 - 200
  • [7] Cross-Scanner Harmonization of Neuromelanin-Sensitive MRI for Multi-Site Studies
    Wengler, Kenneth
    Cassidy, Clifford
    van der Pluijm, Marieke
    Weinstein, Jodi
    Abi-Dargham, Anissa
    van de Giessen, Elsmarieke
    Horga, Guillermo
    BIOLOGICAL PSYCHIATRY, 2021, 89 (09) : S356 - S356
  • [8] Harmonization of multi-site diffusion tensor imaging data
    Fortin, Jean-Philippe
    Parker, Drew
    Tunc, Birkan
    Watanabe, Takanori
    Elliott, Mark A.
    Ruparel, Kosha
    Roalf, David R.
    Satterthwaite, Theodore D.
    Gur, Ruben C.
    Gur, Raquel E.
    Schultz, Robert T.
    Verma, Ragini
    Shinohara, Russell T.
    NEUROIMAGE, 2017, 161 : 149 - 170
  • [9] Characterization of the extracellular free water signal in schizophrenia using multi-site diffusion MRI harmonization
    Cetin-Karayumak, Suheyla
    Lyall, Amanda E. E.
    Di Biase, Maria A. A.
    Seitz-Holland, Johanna
    Zhang, Fan
    Kelly, Sinead
    Elad, Doron
    Pearlson, Godfrey
    Tamminga, Carol A. A.
    Sweeney, John A. A.
    Clementz, Brett A. A.
    Schretlen, David
    Stegmayer, Katharina
    Walther, Sebastian
    Lee, Jungsun
    Crow, Tim
    James, Anthony
    Voineskos, Aristotle
    Buchanan, Robert W. W.
    Szeszko, Philip R. R.
    Malhotra, Anil K. K.
    Keshavan, Matcheri
    Shenton, Martha E. E.
    Rathi, Yogesh
    Pasternak, Ofer
    Kubicki, Marek
    MOLECULAR PSYCHIATRY, 2023, 28 (05) : 2030 - 2038
  • [10] Characterization of the extracellular free water signal in schizophrenia using multi-site diffusion MRI harmonization
    Suheyla Cetin-Karayumak
    Amanda E. Lyall
    Maria A. Di Biase
    Johanna Seitz-Holland
    Fan Zhang
    Sinead Kelly
    Doron Elad
    Godfrey Pearlson
    Carol A. Tamminga
    John A. Sweeney
    Brett A. Clementz
    David Schretlen
    Katharina Stegmayer
    Sebastian Walther
    Jungsun Lee
    Tim Crow
    Anthony James
    Aristotle Voineskos
    Robert W. Buchanan
    Philip R. Szeszko
    Anil K. Malhotra
    Matcheri Keshavan
    Martha E. Shenton
    Yogesh Rathi
    Ofer Pasternak
    Marek Kubicki
    Molecular Psychiatry, 2023, 28 : 2030 - 2038