Annealed importance sampling

被引:690
|
作者
Neal, RM
机构
[1] Univ Toronto, Dept Stat, Toronto, ON, Canada
[2] Univ Toronto, Dept Comp Sci, Toronto, ON, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
tempered transitions; sequential importance sampling; estimation of normalizing constants; free energy computation;
D O I
10.1023/A:1008923215028
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Simulated annealing-moving from a tractable distribution to a distribution of interest via a sequence of intermediate distributions-has traditionally been used as an inexact method of handling isolated modes in Markov chain samplers. Here, it is shown how one can use the Markov chain transitions for such an annealing sequence to define an importance sampler. The Markov chain aspect allows this method to perform acceptably even for high-dimensional problems, where finding good importance sampling distributions would otherwise be very difficult, while the use of importance weights ensures that the estimates found converge to the correct values as the number of annealing runs increases. This annealed importance sampling procedure resembles the second half of the previously-studied tempered transitions, and can be seen as a generalization of a recently-proposed variant of sequential importance sampling. It is also related to thermodynamic integration methods for estimating ratios of normalizing constants. Annealed importance sampling is most attractive when isolated modes are present, or when estimates of normalizing constants are required, but it may also be more generally useful, since its independent sampling allows one to bypass some of the problems of assessing convergence and autocorrelation in Markov chain samplers.
引用
收藏
页码:125 / 139
页数:15
相关论文
共 50 条
  • [1] Annealed importance sampling
    Radford M. Neal
    [J]. Statistics and Computing, 2001, 11 : 125 - 139
  • [2] Annealed importance sampling of peptides
    Lyman, Edward R.
    Zuckerman, Daniel M.
    [J]. BIOPHYSICAL JOURNAL, 2007, : 151A - 151A
  • [3] Annealed Adaptive Importance Sampling
    Center, Julian L., Jr.
    [J]. BAYESIAN INFERENCE AND MAXIMUM ENTROPY METHODS IN SCIENCE AND ENGINEERING, 2008, 1073 : 119 - 126
  • [4] Annealed importance sampling of peptides
    Lyman, Edward
    Zuckerman, Daniel M.
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (06):
  • [5] Optimization of Annealed Importance Sampling Hyperparameters
    Goshtasbpour, Shirin
    Perez-Cruz, Fernando
    [J]. MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES, ECML PKDD 2022, PT V, 2023, 13717 : 174 - 190
  • [6] Surrogate Likelihoods for Variational Annealed Importance Sampling
    Jankowiak, Martin
    Du Phan
    [J]. INTERNATIONAL CONFERENCE ON MACHINE LEARNING, VOL 162, 2022,
  • [7] Annealed Importance Sampling for Neural Mass Models
    Penny, Will
    Sengupta, Biswa
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2016, 12 (03)
  • [8] Annealed importance sampling with constant cooling rate
    Giovannelli, Edoardo
    Cardini, Gianni
    Gellini, Cristina
    Pietraperzia, Giangaetano
    Chelli, Riccardo
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2015, 142 (07):
  • [9] Iterative ensemble smoothers in the annealed importance sampling framework
    Stordal, Andreas S.
    Elsheikh, Ahmed H.
    [J]. ADVANCES IN WATER RESOURCES, 2015, 86 : 231 - 239
  • [10] Annealed Importance Sampling Reversible Jump MCMC Algorithms
    Karagiannis, Georgios
    Andrieu, Christophe
    [J]. JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 2013, 22 (03) : 623 - 648