Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling (vol 80, pg 7583, 2014)

被引:1
|
作者
Salipante, Stephen J. [1 ]
Kawashima, Toana [1 ]
Rosenthal, Christopher [1 ]
Hoogestraat, Daniel R. [1 ]
Cummings, Lisa A. [1 ]
Sengupta, Dhruba J. [1 ]
Harkins, Timothy T. [2 ]
Cookson, Brad T. [1 ,3 ]
Hoffman, Noah G. [1 ]
机构
[1] Univ Washington, Dept Lab Med, Seattle, WA 98195 USA
[2] Life Technol, San Francisco, CA USA
[3] Univ Washington, Dept Microbiol, Seattle, WA 98195 USA
关键词
D O I
10.1128/AEM.01390-16
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
引用
收藏
页码:4453 / 4453
页数:1
相关论文
共 43 条
  • [1] Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling
    Salipante, Stephen J.
    Kawashima, Toana
    Rosenthal, Christopher
    Hoogestraat, Daniel R.
    Cummings, Lisa A.
    Sengupta, Dhruba J.
    Harkins, Timothy T.
    Cookson, Brad T.
    Hoffman, Noah G.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2014, 80 (24) : 7583 - 7591
  • [2] Next-Generation Sequencing of the Bacterial 16S rRNA Gene for Forensic Soil Comparison: A Feasibility Study
    Jesmok, Ellen M.
    Hopkins, James M.
    Foran, David R.
    JOURNAL OF FORENSIC SCIENCES, 2016, 61 (03) : 607 - 617
  • [3] TOWARDS ALLELE LEVEL HLA GENOTYPING: A COMPARISON OF NEXT-GENERATION SEQUENCING PLATFORMS - ION TORRENT PGM AND ILLUMINA MISEQ
    Lind, Curt
    Mackiewicz, Kate
    Duke, Jamie
    Sasson, Ariella
    Mahoney, Stephen
    Rappaport, Eric
    Derbeneva, Olga
    Wallace, Doug
    Rozemuller, Erik
    Penning, Maarten
    Mulder, Wietse
    Monos, Dimitri
    HUMAN IMMUNOLOGY, 2012, 73 : 16 - 16
  • [4] Comparison of different hypervariable regions of 16S rRNA for taxonomic profiling of vaginal microbiota using next-generation sequencing
    Sirichoat, Auttawit
    Sankuntaw, Nipaporn
    Engchanil, Chulapan
    Buppasiri, Pranom
    Faksri, Kiatichai
    Namwat, Wises
    Chantratita, Wasun
    Lulitanond, Viraphong
    ARCHIVES OF MICROBIOLOGY, 2021, 203 (03) : 1159 - 1166
  • [5] Comparison of different hypervariable regions of 16S rRNA for taxonomic profiling of vaginal microbiota using next-generation sequencing
    Auttawit Sirichoat
    Nipaporn Sankuntaw
    Chulapan Engchanil
    Pranom Buppasiri
    Kiatichai Faksri
    Wises Namwat
    Wasun Chantratita
    Viraphong Lulitanond
    Archives of Microbiology, 2021, 203 : 1159 - 1166
  • [6] Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing
    Juenemann, Sebastian
    Prior, Karola
    Szczepanowski, Rafael
    Harks, Inga
    Ehmke, Benjamin
    Goesmann, Alexander
    Stoye, Jens
    Harmsen, Dag
    PLOS ONE, 2012, 7 (08):
  • [7] Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers
    Myer, Phillip R.
    Kim, MinSeok
    Freetly, Harvey C.
    Smith, Timothy P. L.
    JOURNAL OF MICROBIOLOGICAL METHODS, 2016, 127 : 132 - 140
  • [8] Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers
    Park, Changwoo
    Kim, Seung Bum
    Choi, Sang Ho
    Kim, Seil
    FRONTIERS IN MICROBIOLOGY, 2021, 12
  • [9] 16S rRNA Next-Generation Sequencing May Not Be Useful for Examining Suspected Cases of Spontaneous Bacterial Peritonitis
    Yang, Chan Jin
    Song, Ju Sun
    Yoo, Jeong-Ju
    Park, Keun Woo
    Yun, Jina
    Kim, Sang Gyune
    Kim, Young Seok
    MEDICINA-LITHUANIA, 2024, 60 (02):
  • [10] Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections
    Salipante, Stephen J.
    Sengupta, Dhruba J.
    Rosenthal, Christopher
    Costa, Gina
    Spangler, Jessica
    Sims, Elizabeth H.
    Jacobs, Michael A.
    Miller, Samuel I.
    Hoogestraat, Daniel R.
    Cookson, Brad T.
    McCoy, Connor
    Matsen, Frederick A.
    Shendure, Jay
    Lee, Clarence C.
    Harkins, Timothy T.
    Hoffman, Noah G.
    PLOS ONE, 2013, 8 (05):