Pedobacter lentus sp nov and Pedobacter terricola sp nov., isolated from soil

被引:28
|
作者
Yoon, Jung-Hoon [1 ]
Kang, So-Jung [1 ]
Park, Sooyeon [1 ]
Oh, Tae-Kwang [1 ]
机构
[1] KRIBB, Taejon, South Korea
关键词
D O I
10.1099/ijs.0.65146-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two Gram-negative, non-motile, pleomorphic bacterial strains, DS-40(T) and DS-45(T), were isolated from a soil sample collected from Dokdo, Korea, and their exact taxonomic positions were investigated by using a polyphasic approach. Strains DS-40(T) and DS-45(T) grew optimally at 25 degrees C and pH 6.5-7.5 in the presence of 0-1.0% (w/v) NaCl. They contained MK-7 as the predominant menaquinone and possessed iso-C-15:0, iso-C-17:0 3-OH and summed feature 3 (C-16: 1 omega 7c and/or iso-C-15:0 2-OH) as the major fatty acids. The DNA G + C contents of strains DS-40(T) and DS-45(T) were 36.0 and 36.8 mol%, respectively. Strains DS-40(T) and DS-45(T) shared a 16S rRNA gene sequence similarity of 96.7 % and demonstrated a mean DNA-DNA relatedness level of 12 %. Phylogenetic analyses based on 1 6S rRNA gene sequences revealed that strains DS-40(T) and DS-45(T) were most closely phylogenetically affiliated with the genus Pedobacter of the family Sphingobacteriaceae. Strains DS-40(T) and DS-45(T) exhibited 16S rRNA gene sequence similarity values of 91.4-93.7 and 89.9-91.6 % with respect to the type strains of Pedobacter and Sphingobacterium species, respectively. Phenotypic and chemotaxonomic properties, together with the phylogenetic data, support the assignment of strains DS-40(T) and DS-45(T) as two distinct species within the genus Pedobacter. On the basis of phenotypic, phylogenetic and genetic data, strains DS-40(T) and DS-45(T) represent two novel species of the genus Pedobacter, for which the names Pedobacter lentus sp. nov. and Pedobacter terricola sp. nov. are proposed, respectively. The respective type strains are DS-40(T) (=KCTC 12875(T)=JCM 14593(T)) and DS-45(T) (=KCTC 12876(T)=JCM 14594(T)).
引用
收藏
页码:2089 / 2095
页数:7
相关论文
共 50 条
  • [1] Pedobacter arcticus sp nov., a facultative psychrophile isolated from Arctic soil, and emended descriptions of the genus Pedobacter, Pedobacter heparinus, Pedobacter daechungensis, Pedobacter terricola, Pedobacter glucosidilyticus and Pedobacter lentus
    Zhou, Zhichao
    Jiang, Fan
    Wang, Shaohua
    Peng, Fang
    Dai, Jun
    Li, Wenxin
    Fang, Chengxiang
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 : 1963 - 1969
  • [2] Pedobacter jamesrossensis sp nov., Pedobacter lithocola sp nov., Pedobacter mendelii sp nov and Pedobacter petrophilus sp nov., isolated from the Antarctic environment
    Svec, Pavel
    Kralova, Stanislava
    Busse, Hans-Juergen
    Kleinhagauer, Tanita
    Pantucek, Roman
    Maslanova, Ivana
    Cnockaert, Margo
    Vandamme, Peter
    Stankova, Eva
    Gelbicova, Tereza
    Holochova, Pavla
    Bartak, Milos
    Kyrova, Kamila
    Sedlacek, Ivo
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (05) : 1499 - 1507
  • [3] Pedobacter duraquae sp nov., Pedobacter westerhofensis sp nov., Pedobacter metabolipauper sp nov., Pedobacter hartonius sp nov and Pedobacter steynii sp nov., isolated from a hard-water rivulet
    Muurholm, Soeren
    Cousin, Sylvie
    Paeuker, Orsola
    Brambilla, Evelyne
    Stackebrandt, Erko
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 : 2221 - 2227
  • [4] Pedobacter rhodius sp. nov. and Pedobacter punctiformis sp. nov., isolated from soil
    Woo, Haejin
    Chhetri, Geeta
    Kim, Inhyup
    So, Yoonseop
    Park, Sunho
    Jung, Yonghee
    Seo, Taegun
    [J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2024, 117 (01):
  • [5] Pedobacter nyackensis sp nov., Pedobacter alluvionis sp nov and Pedobacter borealis sp nov., isolated from Montana flood-plain sediment and forest soil
    Gordon, Nathan S.
    Valenzuela, Alejandra
    Adams, Sandra M.
    Ramsey, Philip W.
    Pollock, Jarrod L.
    Holben, William E.
    Gannon, James E.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2009, 59 : 1720 - 1726
  • [6] Pedobacter boryungensis sp nov., isolated from soil
    Jung, Yong-Taek
    Lee, Soo-Young
    Choi, Won-Chan
    Oh, Tae-Kwang
    Yoon, Jung-Hoon
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 : 13 - 17
  • [7] Pedobacter luteus sp nov., isolated from soil
    Oh, Hyun-Woo
    Kim, Byung-Chun
    Park, Doo-Sang
    Jeong, Won-Jin
    Kim, Hyangmi
    Lee, Kang Hyun
    Kim, Sung Uk
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 : 1304 - 1310
  • [8] Pedobacter sandarakinus sp nov., isolated from soil
    Yoon, JH
    Lee, MH
    Kang, SJ
    Park, SY
    Oh, TK
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 : 1273 - 1277
  • [9] Pedobacter psychrotolerans sp nov., isolated from soil
    Manandhar, Pooja
    Zhang, Gengxin
    Lama, Arun
    Hu, Yilun
    Gao, Feng
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 : 4560 - 4566
  • [10] Pedobacter terrae sp nov., isolated from soil
    Yoon, Jung-Hoon
    Kang, So-Jung
    Oh, Tae-Kwang
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 : 2462 - 2466