Two sterols, two bilayers: insights on membrane structure from molecular dynamics

被引:9
|
作者
Monje-Galvan, Viviana [1 ]
Klauda, Jeffery B. [1 ,2 ]
机构
[1] Univ Maryland, Dept Chem & Biomol Engn, College Pk, MD 20742 USA
[2] Univ Maryland, Biophys Program, College Pk, MD 20742 USA
基金
美国国家科学基金会;
关键词
Molecular dynamics; cholesterol; ergosterol; membrane properties; CHOLESTEROLS LOCATION; MECHANICAL-PROPERTIES; LIPID-MEMBRANES; FORCE-FIELD; ERGOSTEROL; ORGANIZATION; NMR; RELAXATION; SIMULATION; LANOSTEROL;
D O I
10.1080/08927022.2017.1353690
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Cholesterol (CHL) and ergosterol (ERG) are two predominant sterols in eukaryotic cells. The differences in their chemical structure can influence membrane structure and dynamics; this study discusses the effect CHL and ERG have on yeast membrane models with characteristic lipid composition for the endoplasmic reticulum (ER) and the trans-Golgi network (TGN) of yeast Saccharomyces cerevisiae. Molecular dynamics simulations were used to understand the atomic details of the sterols' interaction with lipid bilayers that have both saturated and unsaturated tails as well as neutral and charged headgroups. Our models include phosphatidic acid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine and phosphatidylinositol lipids to mimic the environment of the ER and TGN. The models for each organelle are identical, respectively, except for the sterol type. The overall surface area per lipid has no statistical difference between models for the same organelle, 63.6 +/- 0.4 angstrom(2) in the ER and 60.9 +/- 0.4 angstrom(2) in the TGN with either ERG or CHL. However, the compressibility modulus is approximately 30% lower in the models with ERG. We analyse this difference based on the sterols' chemical structure and examine other membrane properties such as the lipid tails order parameters, bilayer thicknesses, sterol tilt angles and sterol spatial orientation with respect to the lipid tails to compare trends with existing data from simulation as well as experiment. This is the first study, to our knowledge, to examine the effect of sterol type on multi-lipid bilayer models with all-atom molecular dynamics.
引用
收藏
页码:1179 / 1188
页数:10
相关论文
共 50 条
  • [1] How two Sterols Affect the Biophysical Properties of Membrane Mixtures: Insights from Molecular Dynamics Simulations
    Alavizargar, A.
    Luetgehermoeller, M.
    Keller, F.
    Heuer, A.
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2019, 48 : S220 - S220
  • [2] Fluorescent membrane probes' behavior in lipid bilayers: Insights from molecular dynamics simulations
    Loura L.M.S.
    Prates Ramalho J.P.
    Biophysical Reviews, 2009, 1 (3) : 141 - 148
  • [3] Molecular dynamics study of binary POPC bilayers: molecular condensing effects on membrane structure and dynamics
    Saito, Hiroaki
    Morishita, Tetsuya
    Mizukami, Taku
    Nishiyama, Ken-ichi
    Kawaguchi, Kazutomo
    Nagao, Hidemi
    XXIXTH IUPAP CONFERENCE ON COMPUTATIONAL PHYSICS CCP2017, 2018, 1136
  • [4] MOLECULAR ORDER AND DYNAMICS IN PLANAR LIPID BILAYERS - EFFECTS OF UNSATURATION AND STEROLS
    DEINUM, G
    VANLANGEN, H
    VANGINKEL, G
    LEVINE, YK
    BIOCHEMISTRY, 1988, 27 (03) : 852 - 860
  • [5] The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations
    Kalli, Antreas C.
    Rog, Tomasz
    Vattulainen, Ilpo
    Campbell, Iain D.
    Sansom, Mark S. P.
    JOURNAL OF MEMBRANE BIOLOGY, 2017, 250 (04): : 337 - 351
  • [6] The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations
    Antreas C. Kalli
    Tomasz Rog
    Ilpo Vattulainen
    Iain D. Campbell
    Mark S. P. Sansom
    The Journal of Membrane Biology, 2017, 250 : 337 - 351
  • [7] Molecular and collective dynamics of membrane bilayers: Evidence from NMR relaxation.
    Brown, MF
    Job, C
    Trouard, TP
    BIOPHYSICAL JOURNAL, 1996, 70 (02) : MP446 - MP446
  • [8] Molecular Insights on the Two Fluorescence Lifetimes Displayed by Warfarin from Fluorescence Anisotropy and Molecular Dynamics Studies
    Karlsson, Bjorn C. G.
    Rosengren, Annika M.
    Andersson, Per Ola
    Nicholls, Ian A.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (22): : 7945 - 7949
  • [9] Refining the structure of lipid bilayers with insight from molecular dynamics simulations
    Klauda, JB
    Pastor, RW
    Kucerka, N
    Brooks, BR
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2005, 230 : U1391 - U1391
  • [10] Structure of Ascorbyl Palmitate Bilayers (Aspasomes) from Molecular Dynamics Simulation
    Han, Sanghwa
    BULLETIN OF THE KOREAN CHEMICAL SOCIETY, 2018, 39 (07): : 887 - 890