Global optimization on funneling landscapes

被引:155
|
作者
Leary, RH [1 ]
机构
[1] Univ Calif San Diego, San Diego Supercomp Ctr, San Diego, CA 92186 USA
基金
美国国家科学基金会;
关键词
Global optimization; Lennard-Jones clusters; Basin-hopping; Energy landscape; Folding funnel; Molecular conformation;
D O I
10.1023/A:1026500301312
中图分类号
C93 [管理学]; O22 [运筹学];
学科分类号
070105 ; 12 ; 1201 ; 1202 ; 120202 ;
摘要
Molecular conformation problems arising in computational chemistry require the global minimization of a non-convex potential energy function representing the interactions of, for example, the component atoms in a molecular system. Typically the number of local minima on the potential energy surface grows exponentially with system size, and often becomes enormous even for relatively modestly sized systems. Thus the simple multistart strategy of randomly sampling local minima becomes impractical. However, for many molecular conformation potential energy surfaces the local minima can be organized by a simple adjacency relation into a single or at most a small number of funnels. A distinguished local minimum lies at the bottom of each funnel and a monotonically descending sequence of adjacent local minima connects every local minimum in the funnel with the funnel bottom. Thus the global minimum can be found among the comparatively small number of funnel bottoms, and a multistart strategy based on sampling funnel bottoms becomes viable. In this paper we present such an algorithm of the basin-hopping type and apply it to the Lennard-Jones cluster problem, an intensely studied molecular conformation problem which has become a benchmark for global optimization algorithms. Results of numerical experiments are presented which confirm both the multifunneling character of the Lennard-Jones potential surface as well as the efficiency of the algorithm. The algorithm has found all of the current putative global minima in the literature up to 110 atoms, as well as discovered a new global minimum for the 98-atom cluster of a novel geometrical class.
引用
收藏
页码:367 / 383
页数:17
相关论文
共 50 条
  • [1] Global Optimization on Funneling Landscapes
    Robert H. Leary
    Journal of Global Optimization, 2000, 18 : 367 - 383
  • [2] Global optimization and the energy landscapes of Dzugutov clusters
    Doye, JPK
    Wales, DJ
    Simdyankin, SI
    FARADAY DISCUSSIONS, 2001, 118 : 159 - 170
  • [3] Funneling and frustration in the energy landscapes of some designed and simplified proteins
    Truong, Ha H.
    Kim, Bobby L.
    Schafer, Nicholas P.
    Wolynes, Peter G.
    JOURNAL OF CHEMICAL PHYSICS, 2013, 139 (12):
  • [4] Funneling algorithms for multiscale optimization on rugged terrains
    Lucia, A
    DiMaggio, PA
    Depa, P
    INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH, 2004, 43 (14) : 3770 - 3781
  • [5] Adaptation in stochastic tunneling global optimization of complex potential energy landscapes
    Hamacher, K.
    EUROPHYSICS LETTERS, 2006, 74 (06): : 944 - 950
  • [6] Generating candidates in global optimization algorithms using complementary energy landscapes
    Slavensky, Andreas Moller
    Christiansen, Mads-Peter V.
    Hammer, Bjork
    JOURNAL OF CHEMICAL PHYSICS, 2023, 159 (02):
  • [7] Energy Landscapes and Global Optimization of Self-Assembling Cyclic Peptides
    Oakley, Mark T.
    Johnston, Roy L.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (04) : 1810 - 1816
  • [8] Global optimization of proteins using a dynamical lattice model: Ground states and energy landscapes
    Dressel, F.
    Kobe, S.
    CHEMICAL PHYSICS LETTERS, 2006, 424 (4-6) : 369 - 373
  • [9] Energy landscapes, global optimization and dynamics of the polyalanine Ac(ala)8NHMe
    Mortenson, PN
    Wales, DJ
    JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (14): : 6443 - 6454
  • [10] Global Perspectives on Landscapes of Warfare
    Roscoe, Paul
    LATIN AMERICAN ANTIQUITY, 2023, 34 (02) : 448 - 450