Extracting functional components of neural dynamics with Independent Component Analysis and inverse Current Source Density

被引:24
|
作者
Leski, Szymon [1 ]
Kublik, Ewa [1 ]
Swiejkowski, Daniel A. [1 ]
Wrobel, Andrzej [1 ]
Wojcik, Daniel K. [1 ]
机构
[1] M Nencki Inst Expt Biol, Dept Neurophysiol, PL-02093 Warsaw, Poland
关键词
Local field potentials (LFP); Inverse Current Source Density (iCSD); Independent Component Analysis (ICA); Somatosensory evoked potentials (EP); Thalamic processing; VIBRISSAL INFORMATION; HIPPOCAMPAL SLICES; ANURAN CEREBELLUM; BLIND SEPARATION; RAT THALAMUS; FMRI DATA; NUCLEUS; CORTEX; BARRELOIDS; RESPONSES;
D O I
10.1007/s10827-009-0203-1
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Local field potentials have good temporal resolution but are blurred due to the slow spatial decay of the electric field. For simultaneous recordings on regular grids one can reconstruct efficiently the current sources (CSD) using the inverse Current Source Density method (iCSD). It is possible to decompose the resultant spatiotemporal information about the current dynamics into functional components using Independent Component Analysis (ICA). We show on test data modeling recordings of evoked potentials on a grid of 4x5x7 points that meaningful results are obtained with spatial ICA decomposition of reconstructed CSD. The components obtained through decomposition of CSD are better defined and allow easier physiological interpretation than the results of similar analysis of corresponding evoked potentials in the thalamus. We show that spatiotemporal ICA decompositions can perform better for certain types of sources but it does not seem to be the case for the experimental data studied. Having found the appropriate approach to decomposing neural dynamics into functional components we use the technique to study the somatosensory evoked potentials recorded on a grid spanning a large part of the forebrain. We discuss two example components associated with the first waves of activation of the somatosensory thalamus. We show that the proposed method brings up new, more detailed information on the time and spatial location of specific activity conveyed through various parts of the somatosensory thalamus in the rat.
引用
收藏
页码:459 / 473
页数:15
相关论文
共 50 条
  • [1] Extracting functional components of neural dynamics with Independent Component Analysis and inverse Current Source Density
    Szymon Łęski
    Ewa Kublik
    Daniel A. Świejkowski
    Andrzej Wróbel
    Daniel K. Wójcik
    [J]. Journal of Computational Neuroscience, 2010, 29 : 459 - 473
  • [2] Extracting Conditionally Heteroskedastic Components using Independent Component Analysis
    Miettinen, Jari
    Matilainen, Markus
    Nordhausen, Klaus
    Taskinen, Sara
    [J]. JOURNAL OF TIME SERIES ANALYSIS, 2020, 41 (02) : 293 - 311
  • [3] Extracting features based on independent component analysis with source dependency
    Qu, W
    Liu, HP
    Zhang, HJ
    [J]. Proceedings of 2005 International Conference on Machine Learning and Cybernetics, Vols 1-9, 2005, : 4636 - 4640
  • [4] Extracting mode components in laser intensity distribution by independent component analysis
    Fang, HT
    Huang, DS
    [J]. APPLIED OPTICS, 2005, 44 (18) : 3646 - 3653
  • [5] Group Independent Component Analysis (gICA) and Current Source Density (CSD) in the study of EEG in ADHD adults
    Ponomarev, Valery A.
    Mueller, Andreas
    Candrian, Gian
    Grin-Yatsenko, Vera A.
    Kropotov, Juri D.
    [J]. CLINICAL NEUROPHYSIOLOGY, 2014, 125 (01) : 83 - 97
  • [6] Extracting Intrinsic Functional Networks with Feature-Based Group Independent Component Analysis
    Vince D. Calhoun
    Elena Allen
    [J]. Psychometrika, 2013, 78 : 243 - 259
  • [7] Extracting Intrinsic Functional Networks with Feature-Based Group Independent Component Analysis
    Calhoun, Vince D.
    Allen, Elena
    [J]. PSYCHOMETRIKA, 2013, 78 (02) : 243 - 259
  • [8] Extracting Speech Signals using Independent Component Analysis
    Choi, Charles T. M.
    Lee, Yi-Hsuan
    [J]. 13TH INTERNATIONAL CONFERENCE ON BIOMEDICAL ENGINEERING, VOLS 1-3, 2009, 23 (1-3): : 179 - +
  • [9] Independent component analysis in extracting characteristic signals in EEG
    Chen, HF
    Zeng, M
    Yao, DZ
    [J]. IEEE-EMBS ASIA PACIFIC CONFERENCE ON BIOMEDICAL ENGINEERING - PROCEEDINGS, PTS 1 & 2, 2000, : 189 - 190
  • [10] Source density driven adaptive independent component analysis approach for FMRI signal analysis
    Hong, BM
    Calhoun, VD
    [J]. MACHINE LEARNING FOR SIGNAL PROCESSING XIV, 2004, : 463 - 472