How quantitative is metabarcoding: A meta-analytical approach

被引:231
|
作者
Lamb, Philip D. [1 ]
Hunter, Ewan [2 ,3 ]
Pinnegar, John K. [2 ,3 ]
Creer, Simon [4 ]
Davies, Richard G. [1 ]
Taylor, Martin I. [1 ]
机构
[1] Univ East Anglia, Sch Biol Sci, Norwich, Norfolk, England
[2] Univ East Anglia, Sch Environm Sci, Norwich, Norfolk, England
[3] Cefas, Lowestoft, Suffolk, England
[4] Bangor Univ, Sch Biol Sci, Bangor, Gwynedd, Wales
基金
英国自然环境研究理事会;
关键词
biomass; high-throughput sequencing; meta-analysis; metabarcoding; next-generation sequencing; DNA; COMMUNITY; DIET; IDENTIFICATION; SELECTION; BIOMASS;
D O I
10.1111/mec.14920
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original proportions of species in a community. To quantify our current understanding, we conducted a structured review and meta-analysis. The analysis suggests that a weak quantitative relationship may exist between the biomass and sequences produced (slope = 0.52 +/- 0.34, p < 0.01), albeit with a large degree of uncertainty. None of the tested moderators, sequencing platform type, the number of species used in a trial or the source of DNA, were able to explain the variance. Our current understanding of the factors affecting the quantitative performance of metabarcoding is still limited: additional research is required before metabarcoding can be confidently utilized for quantitative applications. Until then, we advocate the inclusion of mock communities when metabarcoding as this facilitates direct assessment of the quantitative ability of any given study.
引用
收藏
页码:420 / 430
页数:11
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