The pyroptosis-related gene signature predicts prognosis and indicates immune activity in hepatocellular carcinoma

被引:52
|
作者
Deng, Min [1 ,2 ]
Sun, Shiquan [4 ]
Zhao, Rongce [1 ,2 ]
Guan, Renguo [1 ,2 ]
Zhang, Zhen [2 ,3 ]
Li, Shaohua [1 ,2 ]
Wei, Wei [1 ,2 ]
Guo, Rongping [1 ,2 ]
机构
[1] Sun Yat Sen Univ, Canc Ctr, Dept Liver Surg, 651 Dongfeng East Rd, Guangzhou 510060, Peoples R China
[2] Collaborat Innovat Ctr Canc Med, State Key Lab Oncol South China, Guangzhou 510060, Peoples R China
[3] Chinese Acad Med Sci, Res Unit Precis Diag & Treatment Gastrointestinal, Guangzhou 510060, Peoples R China
[4] Sun Yat Sen Univ, Affiliated Hosp 7, Dept Dermatovenereol, Shenzhen 518000, Peoples R China
基金
中国国家自然科学基金;
关键词
Hepatocellular carcinoma; Pyroptosis; Prognosis; Immunity; Nomogram; CELL-DEATH; MECHANISMS; INHIBITORS; GASDERMINS; APOPTOSIS; PROTEIN; DFNA5; PORE;
D O I
10.1186/s10020-022-00445-0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Background Hepatocellular carcinoma (HCC) remains one of the most common malignant tumors with poor survival. Pyroptosis is a kind of programmed cell death that can regulate the proliferation, invasion, and metastasis of tumor cells. However, the expression levels of pyroptosis-related genes (PRGs) in HCC and their relationship with prognosis are still unclear. Methods Our study identified 35 PRGs through bioinformatics analysis that were differentially expressed between tumor samples and nontumor samples. According to these differentially expressed genes, HCC patients could be divided into two groups, cluster 1 and cluster 2. The least absolute shrinkage and selection operator (LASSO) Cox regression method was performed to construct a 10-gene signature that classified HCC patients in the cancer genome atlas (TCGA) database into low-risk and high-risk groups. Results The results showed that the survival rate of HCC patients in the low-risk group was significantly higher than that in the high-risk group (p < 0.001). The validation cohort, the Gene Expression Omnibus (GEO) cohort, was divided into two risk groups based on the median risk score calculated by the TCGA cohort. The overall survival (OS) of the low-risk group was significantly better than that of the high-risk group (p = 0.007). Univariate and multivariate Cox regression analyses revealed that the risk score was an independent factor in predicting OS in HCC patients. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses showed that immune-related high-risk groups were rich in genes and had reduced immune status. Conclusions PRGs play a significant role in tumor immunity and have the potential capability to predict the prognosis of HCC patients.
引用
收藏
页数:14
相关论文
共 50 条
  • [1] The pyroptosis-related gene signature predicts prognosis and indicates immune activity in hepatocellular carcinoma
    Min Deng
    Shiquan Sun
    Rongce Zhao
    Renguo Guan
    Zhen Zhang
    Shaohua Li
    Wei Wei
    Rongping Guo
    [J]. Molecular Medicine, 2022, 28
  • [2] A pyroptosis-related gene signature predicts prognosis and immune microenvironment in hepatocellular carcinoma
    Yifeng Jin
    Xiaofan Pu
    Dongnan Ping
    Chaojie Huang
    Guoping Ding
    Liping Cao
    [J]. World Journal of Surgical Oncology, 20
  • [3] A pyroptosis-related gene signature predicts prognosis and immune microenvironment in hepatocellular carcinoma
    Jin, Yifeng
    Pu, Xiaofan
    Ping, Dongnan
    Huang, Chaojie
    Ding, Guoping
    Cao, Liping
    [J]. WORLD JOURNAL OF SURGICAL ONCOLOGY, 2022, 20 (01)
  • [4] The Pyroptosis-Related Gene Signature Predicts the Prognosis of Hepatocellular Carcinoma
    Zhang, Shuqiao
    Li, Xinyu
    Zhang, Xiang
    Zhang, Shijun
    Tang, Chunzhi
    Kuang, Weihong
    [J]. FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 8
  • [5] Pyroptosis-Related Gene Signature Predicts Prognosis and Indicates Immune Microenvironment Infiltration in Glioma
    Zhang, Yulian
    Zhang, Chuanpeng
    Yang, Yanbo
    Wang, Guohui
    Wang, Zai
    Liu, Jiang
    Zhang, Li
    Yu, Yanbing
    [J]. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 10
  • [6] Identification of the Pyroptosis-Related Prognosis Gene Signature and Immune Infiltration in Hepatocellular Carcinoma
    Yu, Heng
    Bai, Xue
    Zheng, Wangyang
    [J]. DISEASE MARKERS, 2022, 2022
  • [7] Pyroptosis-Related LncRNA Signature Predicts Prognosis and Is Associated With Immune Infiltration in Hepatocellular Carcinoma
    Liu, Ze-Kun
    Wu, Ke-Fei
    Zhang, Ren-Yu
    Kong, Ling-Min
    Shang, Run-Ze
    Lv, Jian-Jun
    Li, Can
    Lu, Meng
    Yong, Yu-Le
    Zhang, Cong
    Zheng, Nai-Shan
    Li, Yan-Hong
    Chen, Zhi-Nan
    Bian, Huijie
    Wei, Ding
    [J]. FRONTIERS IN ONCOLOGY, 2022, 12
  • [8] A pyroptosis-related signature predicts prognosis and indicates immune microenvironment infiltration in glioma
    Chen, Jia
    Chen, Shanwei
    Li, Bingxian
    Zhou, Shaojiong
    Lin, Han
    [J]. CANCER MEDICINE, 2023, 12 (04): : 5071 - 5087
  • [9] A pyroptosis-related gene signature for prognosis prediction in hepatocellular carcinoma
    Chen, Yongwei
    Zhu, Yanyun
    Dong, Yuanmei
    Li, Huizi
    Gao, Chumeng
    Zhu, Guoqiang
    Mi, Xiao
    Li, Chengcheng
    Xu, Yu
    Wang, Guoqiang
    Cai, Shangli
    Han, Yusheng
    Xu, Chunwei
    Wang, Wenxian
    Yang, Shizhong
    Ji, Wenbin
    [J]. FRONTIERS IN ONCOLOGY, 2023, 13
  • [10] The Pyroptosis-Related Long Noncoding RNA Signature Predicts Prognosis and Indicates Immunotherapeutic Efficiency in Hepatocellular Carcinoma
    Wang, Tao
    Yang, Yi
    Sun, Ting
    Qiu, Haizhou
    Wang, Jian
    Ding, Cheng
    Lan, Ren
    He, Qiang
    Wang, Wentao
    [J]. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 10