Folding dynamics of polymorphic G-quadruplex structures

被引:25
|
作者
Grun, J. Tassilo [1 ]
Schwalbe, Harald [2 ,3 ]
机构
[1] Weizmann Inst Sci, Dept Chem & Biol Phys, Herzl Str 234, IL-7640001 Rehovot, Israel
[2] Goethe Univ Frankfurt, Inst Organ Chem & Chem Biol, Max von Laue Str 7, D-60438 Frankfurt, Germany
[3] Goethe Univ Frankfurt, Ctr Biomol Magnet Resonance BMRZ, Frankfurt, Germany
关键词
MAJOR G-QUADRUPLEX; DNA G-QUADRUPLEXES; C-MYC PROMOTER; HTERT CORE PROMOTER; HUMAN TELOMERIC DNA; I-MOTIF; CONFORMATIONAL DYNAMICS; G-TRIPLEX; NMR-SPECTROSCOPY; GENE-EXPRESSION;
D O I
10.1002/bip.23477
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
G-quadruplexes (G4), found in numerous places within the human genome, are involved in essential processes of cell regulation. Chromosomal DNA G4s are involved for example, in replication and transcription as first steps of gene expression. Hence, they influence a plethora of downstream processes. G4s possess an intricate structure that differs from canonical B-form DNA. Identical DNA G4 sequences can adopt multiple long-lived conformations, a phenomenon known as G4 polymorphism. A detailed understanding of the molecular mechanisms that drive G4 folding is essential to understand their ambivalent regulatory roles. Disentangling the inherent dynamic and polymorphic nature of G4 structures thus is key to unravel their biological functions and make them amenable as molecular targets in novel therapeutic approaches. We here review recent experimental approaches to monitor G4 folding and discuss structural aspects for possible folding pathways. Substantial progress in the understanding of G4 folding within the recent years now allows drawing comprehensive models of the complex folding energy landscape of G4s that we herein evaluate based on computational and experimental evidence.
引用
收藏
页数:15
相关论文
共 50 条
  • [1] Folding dynamics of polymorphic G-quadruplex structures (vol 254, pg 189, 2022)
    Grun, J. Tassilo
    Schwalbe, Harald
    [J]. BIOPOLYMERS, 2022, 113 (05)
  • [2] Monomorphic RNA G-Quadruplex and Polymorphic DNA G-Quadruplex Structures Responding to Cellular Environmental Factors
    Zhang, Dong-Hao
    Fujimoto, Takeshi
    Saxena, Sarika
    Yu, Hai-Qing
    Miyoshi, Daisuke
    Sugimoto, Naoki
    [J]. BIOCHEMISTRY, 2010, 49 (21) : 4554 - 4563
  • [3] Folding Kinetics of Multiple G-Quadruplex Telomeric DNA Structures
    Kristoffersen, Emil L.
    Coletta, Andrea
    Lund, Line
    Schiott, Birgit
    Birkedal, Victoria
    [J]. BIOPHYSICAL JOURNAL, 2020, 118 (03) : 335A - 335A
  • [4] G-Quadruplex DNA Folding and Dynamics within Duplex DNA
    Kreig, Alex
    Calvert, Jacob
    Tippana, Ramreddy
    Myong, Su-a
    [J]. BIOPHYSICAL JOURNAL, 2014, 106 (02) : 64A - 64A
  • [5] G-quadruplex dynamics
    Harkness, Robert W., V
    Mittermaier, Anthony K.
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2017, 1865 (11): : 1544 - 1554
  • [6] Folding Landscape of a Parallel G-Quadruplex
    Gray, Robert D.
    Trent, John O.
    Arumugam, Sengodagounder
    Chaires, Jonathan B.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2019, 10 (05): : 1146 - 1151
  • [7] Energetic Basis of Human Telomeric DNA Folding into G-Quadruplex Structures
    Boncina, Matjaz
    Lah, Jurij
    Prislan, Iztok
    Vesnaver, Gorazd
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (23) : 9657 - 9663
  • [8] Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
    You, Huijuan
    Zeng, Xiangjun
    Xu, Yue
    Lim, Ci Ji
    Efremov, Artem K.
    Anh Tuan Phan
    Yan, Jie
    [J]. NUCLEIC ACIDS RESEARCH, 2014, 42 (13) : 8789 - 8795
  • [9] Structural dynamics of propeller loop: towards folding of RNA G-quadruplex
    Havrila, Marek
    Stadlbauer, Petr
    Kuhrova, Petra
    Banas, Pavel
    Mergny, Jean-Louis
    Otyepka, Michal
    Sponer, Jiri
    [J]. NUCLEIC ACIDS RESEARCH, 2018, 46 (17) : 8754 - 8771
  • [10] Single - Molecule Fluorescence Microscopy of Folding Dynamics of G-Quadruplex DNA
    Aznauryan, Mikayel
    Birkedal, Victoria
    [J]. BIOPHYSICAL JOURNAL, 2017, 112 (03) : 214A - 215A