Biosequence Analysis using Intel® Xeon Phi

被引：1

作者：

Sinha, Pradeep ^{[1
]}

Misra, Goldi ^{[1
]}

Vikraman, Deepu ^{[1
]}

Das, Abhishek ^{[1
]}

Desai, Shraddha ^{[1
]}

Pawar, Sucheta ^{[1
]}

Shewale, Kalyani ^{[1
]}

机构：

[1] C DAC, HPCS, Pune, Maharashtra, India

来源：

UKSIM-AMSS SEVENTH EUROPEAN MODELLING SYMPOSIUM ON COMPUTER MODELLING AND SIMULATION (EMS 2013) | 2013年

关键词：

Intel Xeon Phi; coprocessor; MPI-HMMER; Native Compilation; Offload Compilation; MPI; est; pataa; Uniprot_sprot; High Performance Computing;

D O I：

10.1109/EMS.2013.83

中图分类号：

TP301 [理论、方法];

学科分类号：

081202 ;

摘要：

Due to the ever-increasing size of sequence databases, it has become clear that faster techniques must be employed to effectively perform biological sequence analysis in a reasonable amount of time. In bioinformatics, protein sequence alignment is one of the fundamental tasks. MPI-HMMER is one of the applications that perform this kind of bio-sequence analysis. Since the growth of biological data is exponential, there is an ever-increasing demand for computational power. This paper discusses the behavior of MPI-HMMER on hybrid architecture by using native compilation technique on Intel Xeon Phi.

引用

页码：497 / 499

页数：3

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