Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

被引：28

作者：

Pati, Amrita ^{[1
]}

Gronow, Sabine ^{[3
]}

Lapidus, Alla ^{[1
]}

Copeland, Alex ^{[1
]}

Del Rio, Tijana Glavina ^{[1
]}

Nolan, Matt ^{[1
]}

Lucas, Susan ^{[1
]}

Tice, Hope ^{[1
]}

Cheng, Jan-Fang ^{[1
]}

Han, Cliff ^{[1
,2
]}

Chertkov, Olga ^{[1
,2
]}

Bruce, David ^{[1
,2
]}

Tapia, Roxanne ^{[1
,2
]}

Goodwin, Lynne ^{[1
,2
]}

Pitluck, Sam ^{[1
]}

Liolios, Konstantinos ^{[1
]}

Ivanova, Natalia ^{[1
]}

Mavromatis, Konstantinos ^{[1
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[1
,5
]}

Hauser, Loren ^{[1
,5
]}

Chang, Yun-Juan ^{[1
,5
]}

Jeffries, Cynthia D. ^{[1
,5
]}

Detter, John C. ^{[1
,2
]}

Rohde, Manfred ^{[6
]}

Goeker, Markus ^{[3
]}

Bristow, James ^{[1
]}

Eisen, Jonathan A. ^{[1
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[1
]}

Klenk, Hans-Peter ^{[3
]}

Kyrpides, Nikos C. ^{[1
]}

机构：

[1] US DOE, Joint Genome Inst, Walnut Creek, CA USA

[2] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[3] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[4] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2010年 / 2卷 / 03期

关键词：

symbiotic; Spartina alterniflora Loisel; nitrogen fixation; micro-anaerophilic; motile; Campylobacteraceae; GEBA; SPARTINA-ALTERNIFLORA LOISEL; CAMPYLOBACTER; BACTERIA; PROPOSAL; ARCHAEA; IDENTIFICATION; SYSTEM; GRAPHS; ROOTS; TOOL;

D O I：

10.4056/sigs.912121

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：300 / 308

页数：9

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