COVLIAS 1.0: Lung Segmentation in COVID-19 Computed Tomography Scans Using Hybrid Deep Learning Artificial Intelligence Models

被引:32
|
作者
Suri, Jasjit S. [1 ,2 ]
Agarwal, Sushant [2 ,3 ]
Pathak, Rajesh [4 ]
Ketireddy, Vedmanvitha [5 ]
Columbu, Marta [6 ]
Saba, Luca [6 ]
Gupta, Suneet K. [7 ]
Faa, Gavino [8 ]
Singh, Inder M. [1 ]
Turk, Monika [9 ]
Chadha, Paramjit S. [1 ]
Johri, Amer M. [10 ]
Khanna, Narendra N. [11 ]
Viskovic, Klaudija [12 ]
Mavrogeni, Sophie [13 ]
Laird, John R. [14 ]
Pareek, Gyan [15 ]
Miner, Martin [16 ]
Sobel, David W. [15 ]
Balestrieri, Antonella [6 ]
Sfikakis, Petros P. [17 ]
Tsoulfas, George [18 ]
Protogerou, Athanasios [19 ]
Misra, Durga Prasanna [20 ]
Agarwal, Vikas [20 ]
Kitas, George D. [21 ,22 ]
Teji, Jagjit S. [23 ]
Al-Maini, Mustafa [24 ]
Dhanjil, Surinder K. [25 ]
Nicolaides, Andrew [26 ]
Sharma, Aditya [27 ]
Rathore, Vijay [25 ]
Fatemi, Mostafa [28 ]
Alizad, Azra [29 ]
Krishnan, Pudukode R. [30 ]
Frence, Nagy [31 ]
Ruzsa, Zoltan [31 ]
Gupta, Archna [32 ]
Naidu, Subbaram [33 ]
Kalra, Mannudeep [34 ]
机构
[1] AtheroPoint, Stroke Diagnost & Monitoring Div, Roseville, CA 95661 USA
[2] GBTI, Adv Knowledge Engn Ctr, Roseville, CA 95661 USA
[3] PSIT, Dept Comp Sci Engn, Kanpur 209305, Uttar Pradesh, India
[4] Rawatpura Sarkar Univ, Dept Comp Sci Engn, Raipur 492015, Madhya Pradesh, India
[5] Mira Loma High Sch, Sacramento, CA 95821 USA
[6] Azienda Osped Univ AOU, Dept Radiol, I-09124 Cagliari, Italy
[7] Bennett Univ, Dept Comp Sci, Noida 201310, India
[8] AOU Cagliari, Dept Pathol, I-09124 Cagliari, Italy
[9] Hanse Wissensch Kolleg Inst Adv Study, D-27753 Delmenhorst, Germany
[10] Queens Univ, Dept Med, Div Cardiol, Kingston, ON K7L 3N6, Canada
[11] Indraprastha APOLLO Hosp, Dept Cardiol, New Delhi 208011, India
[12] Univ Hosp Infect Dis, Dept Radiol, Zagreb 10000, Croatia
[13] Onassis Cardiac Surg Ctr, Cardiol Clin, Athens 17674, Greece
[14] Adventist Hlth St Helena, Heart & Vasc Inst, St Helena, CA 94574 USA
[15] Brown Univ, Minimally Invas Urol Inst, Providence, RI 02912 USA
[16] Miriam Hosp Providence, Mens Hlth Ctr, Providence, RI 02906 USA
[17] Natl Kapodistrian Univ Athens, Rheumatol Unit, Athens 15772, Greece
[18] Aristotele Univ Thessaloniki, Dept Transplantat Surg, Thessaloniki 54124, Greece
[19] Natl & Kapodistrian Univ Athens, Athens 15772, Greece
[20] Sanjay Gandhi Postgrad Inst Med Sci, Dept Immunol, Lucknow 226014, Uttar Pradesh, India
[21] Dudley Grp NHS Fdn Trust, Acad Affairs, Dudley DY1 2HQ, England
[22] Univ Manchester, Arthrit Res UK Epidemiol Unit, Manchester M13 9PL, Lancs, England
[23] Ann & Robert H Lurie Childrens Hosp Chicago, Chicago, IL 60611 USA
[24] Allergy Clin Immunol & Rheumatol Inst, Toronto, ON M5G 1N8, Canada
[25] Athero Point LLC, Roseville, CA 95611 USA
[26] Univ Nicosia Med Sch, Vasc Screening & Diagnost Ctr, CY-2408 Nicosia, Cyprus
[27] Univ Virginia, Div Cardiovasc Med, Charlottesville, VA 22904 USA
[28] Mayo Clin, Dept Physiol & Biomed Engn, Coll Med & Sci, Rochester, MN 55905 USA
[29] Mayo Clin, Dept Radiol, Coll Med & Sci, Rochester, MN 55905 USA
[30] Fortis Hosp, Neurol Dept, Bangalore 560076, Karnataka, India
[31] Univ Szeged, Dept Internal Med, Invas Cardiol Div, H-6720 Szeged, Hungary
[32] Sanjay Gandhi Postgrad Inst Med Sci, Radiol Dept, Lucknow 226014, Uttar Pradesh, India
[33] Univ Minnesota, Elect Engn Dept, Duluth, MN 55455 USA
[34] Massachusetts Gen Hosp, Dept Radiol, 55 Fruit St, Boston, MA 02114 USA
关键词
COVID-19; computed tomography; lungs; segmentation; hybrid deep learning; RISK STRATIFICATION; TISSUE CHARACTERIZATION; DISEASE CLASSIFICATION; CAROTID ULTRASOUND; FEATURE-SELECTION; IMT MEASUREMENT; ACCURATE; INTEGRATION; FRAMEWORK; SEVERITY;
D O I
10.3390/diagnostics11081405
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Background: COVID-19 lung segmentation using Computed Tomography (CT) scans is important for the diagnosis of lung severity. The process of automated lung segmentation is challenging due to (a) CT radiation dosage and (b) ground-glass opacities caused by COVID-19. The lung segmentation methodologies proposed in 2020 were semi- or automated but not reliable, accurate, and user-friendly. The proposed study presents a COVID Lung Image Analysis System (COVLIAS 1.0, AtheroPoint (TM), Roseville, CA, USA) consisting of hybrid deep learning (HDL) models for lung segmentation. Methodology: The COVLIAS 1.0 consists of three methods based on solo deep learning (SDL) or hybrid deep learning (HDL). SegNet is proposed in the SDL category while VGG-SegNet and ResNet-SegNet are designed under the HDL paradigm. The three proposed AI approaches were benchmarked against the National Institute of Health (NIH)-based conventional segmentation model using fuzzy-connectedness. A cross-validation protocol with a 40:60 ratio between training and testing was designed, with 10% validation data. The ground truth (GT) was manually traced by a radiologist trained personnel. For performance evaluation, nine different criteria were selected to perform the evaluation of SDL or HDL lung segmentation regions and lungs long axis against GT. Results: Using the database of 5000 chest CT images (from 72 patients), COVLIAS 1.0 yielded AUC of similar to 0.96, similar to 0.97, similar to 0.98, and similar to 0.96 (p-value < 0.001), respectively within 5% range of GT area, for SegNet, VGG-SegNet, ResNet-SegNet, and NIH. The mean Figure of Merit using four models (left and right lung) was above 94%. On benchmarking against the National Institute of Health (NIH) segmentation method, the proposed model demonstrated a 58% and 44% improvement in ResNet-SegNet, 52% and 36% improvement in VGG-SegNet for lung area, and lung long axis, respectively. The PE statistics performance was in the following order: ResNet-SegNet > VGG-SegNet > NIH > SegNet. The HDL runs in <1 s on test data per image. Conclusions: The COVLIAS 1.0 system can be applied in real-time for radiology-based clinical settings.
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页数:36
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