Hepatitis E virus: complete genome sequence and phylogenetic analysis of a Nepali isolate

被引:35
|
作者
Gouvea, V
Snellings, N
Popek, MJ
Longer, CF
Innis, BL
机构
[1] Walter Reed Army Inst Res, Dept Virus Dis, Washington, DC 20307 USA
[2] Walter Reed Army Inst Res, Dept Bacterial Dis, Washington, DC 20307 USA
关键词
hepatitis E; HEV; complete HEV sequence; phylogeny; hypervariable region;
D O I
10.1016/S0168-1702(98)00079-3
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The complete nucleotide sequence of the Nepali strain TK15/92 of hepatitis E (HEV) was determined. It showed the highest sequence homology with the Burmese B1 strain, but closer evolutionary relatedness to the Indian strains. Difficulties in reverse-transcribing and amplifying the hypervariable region in ORF1 suggested that strong secondary structures might be intrinsically responsible for the high mutational rate observed in this region of the HEV genome. (C) 1998 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:21 / 26
页数:6
相关论文
共 50 条
  • [1] Complete genome sequence analysis of an American isolate of Grapevine virus E
    Olufemi J. Alabi
    Sudarsana Poojari
    Kara Sarver
    Robert R. Martin
    Rayapati A. Naidu
    Virus Genes, 2013, 46 : 563 - 566
  • [2] Complete genome sequence analysis of an American isolate of Grapevine virus E
    Alabi, Olufemi J.
    Poojari, Sudarsana
    Sarver, Kara
    Martin, Robert R.
    Naidu, Rayapati A.
    VIRUS GENES, 2013, 46 (03) : 563 - 566
  • [3] Complete Genome Sequence of a Swiss Hepatitis E Virus Isolate from the Liver of a Fattening Pig
    Wist, Valerie
    Kubacki, Jakub
    Lechmann, Julia
    Steck, Marco
    Fraefel, Cornet
    Stephan, Roger
    Bachofen, Claudia
    GENOME ANNOUNCEMENTS, 2018, 6 (09)
  • [4] Identification and molecular characterisation of the complete genome of a singapore isolate of hepatitis C virus: Sequence comparison with other strains and phylogenetic analysis
    Lim, SP
    Khu, YL
    Hong, WJ
    Tay, A
    Ting, AE
    Lim, SG
    Tan, YH
    VIRUS GENES, 2001, 23 (01) : 89 - 95
  • [5] Identification and Molecular Characterisation of the Complete Genome of a Singapore Isolate of Hepatitis C Virus: Sequence Comparison with other Strains and Phylogenetic Analysis
    Siew Pheng Lim
    Yee Ling Khu
    Wan Jin Hong
    Alice Tay
    Anthony Eugene Ting
    Seng Gee Lim
    Yin Hwee Tan
    Virus Genes, 2001, 23 : 89 - 95
  • [6] Complete genome sequence and phylogenetic analysis of a goose astrovirus isolate in China
    Zheng Tan
    Hui Zhai
    Ruiqi Sun
    Zhe Sun
    Ruyu Xie
    Lilin Zhang
    Zexing Li
    Jinhai Huang
    Brazilian Journal of Microbiology, 2023, 54 : 427 - 434
  • [7] Complete genome sequence and phylogenetic analysis of a goose astrovirus isolate in China
    Tan, Zheng
    Zhai, Hui
    Sun, Ruiqi
    Sun, Zhe
    Xie, Ruyu
    Zhang, Lilin
    Li, Zexing
    Huang, Jinhai
    BRAZILIAN JOURNAL OF MICROBIOLOGY, 2023, 54 (01) : 427 - 434
  • [8] Phylogenetic analysis of the first complete hepatitis E virus (HEV) genome from Africa
    van Cuyck, H
    Juge, F
    Roques, P
    FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY, 2003, 39 (02): : 133 - 139
  • [9] Full genome sequence and analysis of Indian swine hepatitis E virus isolate of genotype 4
    Chobe, Leenata P.
    Lole, Kavita S.
    Arankalle, Vidya A.
    VETERINARY MICROBIOLOGY, 2006, 114 (3-4) : 240 - 251
  • [10] Coding-complete genome sequence of an isolate of papaya virus E in tomato
    Abrahamian, Peter
    Mollov, Dimitre
    Hammond, Rosemarie W.
    Rivera, Yazmin
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2023, 12 (09):