BOOLEAN MODELS OF BISTABLE BIOLOGICAL SYSTEMS

被引:7
|
作者
Hinkelmann, Franziska [1 ,2 ,3 ]
Laubenbacher, Reinhard [2 ,3 ]
机构
[1] Virginia Polytech Inst & State Univ, Interdisciplinary Ctr Appl Math, Blacksburg, VA 24061 USA
[2] Virginia Polytech Inst & State Univ, Dept Math, Blacksburg, VA 24061 USA
[3] Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA
关键词
Bistability; Boolean Models; Discrete Models; Delay Differential Equations; Gene Regulatory Network;
D O I
10.3934/dcdss.2011.4.1443
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
This paper presents an algorithm for approximating certain types of dynamical systems given by a system of ordinary delay differential equations by a Boolean network model. Often Boolean models are much simpler to understand than complex differential equations models. The motivation for this work comes from mathematical systems biology. While Boolean mechanisms do not provide information about exact concentration rates or time scales, they are often sufficient to capture steady states and other key dynamics. Due to their intuitive nature, such models are very appealing to researchers in the life sciences. This paper is focused on dynamical systems that exhibit bistability and are described by delay equations. It is shown that if a certain motif including a feedback loop is present in the wiring diagram of the system, the Boolean model captures the bistability of molecular switches. The method is applied to two examples from biology, the lac operon and the phage lambda lysis/lysogeny switch.
引用
收藏
页码:1443 / 1456
页数:14
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