Constructing free-energy approximations and generalized belief propagation algorithms

被引:781
|
作者
Yedidia, JS [1 ]
Freeman, WT
Weiss, Y
机构
[1] MERL, Cambridge Res Lab, Cambridge, MA 02139 USA
[2] Hebrew Univ Jerusalem, Sch Engn & Comp Sci, IL-91904 Jerusalem, Israel
[3] MIT, Comp Sci & Artificial Intelligence Lab, Cambridge, MA 02139 USA
关键词
belief propagation (BP); Bethe free energy; cluster variation method; generalized belief propagation (GBP); Kikuchi free energy; message passing; sum-product algorithm;
D O I
10.1109/TIT.2005.850085
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Important inference problems in statistical physics, computer vision, error-correcting coding theory, and artificial intelligence can all be reformulated as. the computation of marginal probabilities on factor graphs. The belief propagation (BP) algorithm is an efficient way to solve these problems that is exact when the factor graph is a tree, but only approximate when the factor graph has cycles. We show that BP fixed points correspond to the stationary points of the Bethe approximation of the free energy for a factor graph. We explain how to obtain region-based free energy approximations that improve the Bethe approximation, and corresponding generalized belief propagation (GBP) algorithms. We emphasize the conditions a free energy approximation must satisfy in order to be a "valid" or "maxent-normal" approximation. We describe the relationship between four different methods that can be used to generate valid approximations: the "Bethe method," the "junction graph method," the "cluster variation method," and the "region graph method." Finally, we explain how to tell whether a region-based approximation, and its corresponding GBP algorithm, is likely to be accurate, and describe empirical results showing that GBP can significantly outperform BP.
引用
收藏
页码:2282 / 2312
页数:31
相关论文
共 50 条
  • [1] Free-energy calculations in protein folding by generalized-ensemble algorithms
    Sugita, Y
    Okamoto, Y
    [J]. COMPUTATIONAL METHODS FOR MACROMOLECULES: CHALLENGES AND APPLICATIONS, 2002, 24 : 304 - 332
  • [2] Generalized Belief Propagation Algorithms for Decoding of Surface Codes
    Old, Josias
    Rispler, Manuel
    [J]. QUANTUM, 2023, 7
  • [3] Bethe free-energy approximations for disordered quantum systems
    Biazzo, I.
    Ramezanpour, A.
    [J]. PHYSICAL REVIEW E, 2014, 89 (06):
  • [4] Generalized free-energy principle and emittance growth
    OShea, PG
    [J]. SPACE CHARGE DOMINATED BEAMS AND APPLICATIONS OF HIGH BRIGHTNESS BEAMS, 1996, (377): : 309 - 321
  • [5] Generalized belief propagation
    Yedidia, JS
    Freeman, WT
    Weiss, Y
    [J]. ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 13, 2001, 13 : 689 - 695
  • [6] Free energy estimates of all-atom protein structures using Generalized Belief Propagation
    Kamisetty, Hetunandan
    Xing, Eric P.
    Langmead, Christopher J.
    [J]. RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS, 2007, 4453 : 366 - +
  • [7] Free energy estimates of all-atom protein structures using generalized belief propagation
    Kamisetty, Hetunandan
    Xing, Eric P.
    Langmead, Christopher J.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2008, 15 (07) : 755 - 766
  • [8] EXACT CRITICAL BUBBLE FREE-ENERGY AND THE EFFECTIVENESS OF EFFECTIVE POTENTIAL APPROXIMATIONS
    BRAHAM, DE
    LEE, CLY
    [J]. PHYSICAL REVIEW D, 1994, 49 (08): : 4094 - 4100
  • [9] TAP Gibbs free energy, belief propagation and sparsity
    Csató, L
    Opper, M
    Winther, O
    [J]. ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 14, VOLS 1 AND 2, 2002, 14 : 657 - 663
  • [10] FREE-ENERGY OF COMPLEXATION AS A COMPONENT OF FREE-ENERGY OF SOLVATION
    GORBACHUK, VV
    SMIRNOV, SA
    SOLOMONOV, BN
    KONOVALOV, AI
    [J]. ZHURNAL OBSHCHEI KHIMII, 1990, 60 (07): : 1441 - 1446